Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120376.Seq
(812 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 149 9e-36
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 149 9e-36
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 149 9e-36
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 149 9e-36
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 149 9e-36
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 149 9e-36
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 145 1e-34
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 145 1e-34
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 145 1e-34
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 50 1e-05
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 50 1e-05
AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein. 50 1e-05
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 50 1e-05
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 50 1e-05
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 50 1e-05
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 33 0.93
AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein. 33 1.2
BC117382-1|AAI17383.1| 401|Homo sapiens heat shock transcriptio... 32 2.8
BC117380-1|AAI17381.1| 401|Homo sapiens heat shock transcriptio... 32 2.8
BC036567-1|AAH36567.1| 401|Homo sapiens heat shock transcriptio... 32 2.8
AK058182-1|BAB71706.1| 401|Homo sapiens protein ( Homo sapiens ... 32 2.8
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 149 bits (362), Expect = 9e-36
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 145 bits (352), Expect = 1e-34
Identities = 61/81 (75%), Positives = 75/81 (92%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 145 bits (352), Expect = 1e-34
Identities = 61/81 (75%), Positives = 75/81 (92%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 145 bits (352), Expect = 1e-34
Identities = 61/81 (75%), Positives = 75/81 (92%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +R T+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 6e-34
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.011
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 97 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 187 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 230
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 89 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 139
>AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein.
Length = 200
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 110
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 97 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 97 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 37.1 bits (82), Expect = 0.075
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 97 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 33.5 bits (73), Expect = 0.93
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISD 324
N++++ DE LAHR+GLIP+ +D
Sbjct: 96 NTSIVQDEILAHRLGLIPIHAD 117
>AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein.
Length = 168
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAK 620
D+ILI +LR GQE+ L + KG GK+ A+
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKKVAR 96
>BC117382-1|AAI17383.1| 401|Homo sapiens heat shock transcription
factor, Y linked 2 protein.
Length = 401
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -1
Query: 431 VCSSVHFTSNVNSTLHSEQKSTHMQSREYLI--LSTTSSDMSGMRPMRCAKNSSLKTVEL 258
+ + H N +T+H ST+MQ+R +++ ++TT+S + P+ +N
Sbjct: 285 IATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPL---QNGYFGLTVE 341
Query: 257 ALTVPNRWPLL 225
VP R+PL+
Sbjct: 342 PSAVPTRYPLV 352
>BC117380-1|AAI17381.1| 401|Homo sapiens heat shock transcription
factor, Y linked 2 protein.
Length = 401
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -1
Query: 431 VCSSVHFTSNVNSTLHSEQKSTHMQSREYLI--LSTTSSDMSGMRPMRCAKNSSLKTVEL 258
+ + H N +T+H ST+MQ+R +++ ++TT+S + P+ +N
Sbjct: 285 IATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPL---QNGYFGLTVE 341
Query: 257 ALTVPNRWPLL 225
VP R+PL+
Sbjct: 342 PSAVPTRYPLV 352
>BC036567-1|AAH36567.1| 401|Homo sapiens heat shock transcription
factor, Y-linked 1 protein.
Length = 401
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -1
Query: 431 VCSSVHFTSNVNSTLHSEQKSTHMQSREYLI--LSTTSSDMSGMRPMRCAKNSSLKTVEL 258
+ + H N +T+H ST+MQ+R +++ ++TT+S + P+ +N
Sbjct: 285 IATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPL---QNGYFGLTVE 341
Query: 257 ALTVPNRWPLL 225
VP R+PL+
Sbjct: 342 PSAVPTRYPLV 352
>AK058182-1|BAB71706.1| 401|Homo sapiens protein ( Homo sapiens
cDNA FLJ25453 fis, clone TST08820. ).
Length = 401
Score = 31.9 bits (69), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -1
Query: 431 VCSSVHFTSNVNSTLHSEQKSTHMQSREYLI--LSTTSSDMSGMRPMRCAKNSSLKTVEL 258
+ + H N +T+H ST+MQ+R +++ ++TT+S + P+ +N
Sbjct: 285 IATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPL---QNGYFGLTVE 341
Query: 257 ALTVPNRWPLL 225
VP R+PL+
Sbjct: 342 PSAVPTRYPLV 352
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,453,521
Number of Sequences: 237096
Number of extensions: 2381848
Number of successful extensions: 12655
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12653
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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