Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120376.Seq
(812 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060644-1|AAL28192.1| 275|Drosophila melanogaster GH07456p pro... 171 1e-42
AJ133650-1|CAB38635.1| 275|Drosophila melanogaster RNA polymera... 171 1e-42
AE014134-2412|AAF53342.1| 275|Drosophila melanogaster CG7885-PA... 171 1e-42
AE014134-2413|AAN10853.1| 117|Drosophila melanogaster CG7885-PB... 66 7e-11
BT001794-1|AAN71549.1| 117|Drosophila melanogaster RH25219p pro... 63 4e-10
AY119625-1|AAM50279.1| 333|Drosophila melanogaster LP03982p pro... 47 4e-05
AE014134-823|AAF52185.1| 333|Drosophila melanogaster CG3756-PA ... 47 4e-05
AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-P... 33 0.46
AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-P... 33 0.46
BT001595-1|AAN71350.1| 559|Drosophila melanogaster RE28319p pro... 30 3.3
AY069210-1|AAL39355.1| 511|Drosophila melanogaster GH26184p pro... 30 3.3
AE014297-4385|AAF56899.2| 515|Drosophila melanogaster CG2010-PA... 30 3.3
AE014297-4384|AAN14173.1| 511|Drosophila melanogaster CG2010-PB... 30 3.3
AY075191-1|AAL68060.1| 623|Drosophila melanogaster AT13424p pro... 30 4.3
>AY060644-1|AAL28192.1| 275|Drosophila melanogaster GH07456p
protein.
Length = 275
Score = 171 bits (416), Expect = 1e-42
Identities = 76/91 (83%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Frame = +3
Query: 516 DYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK 692
+YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV FEYDPDN MRHTLYPK
Sbjct: 141 EYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK 200
Query: 693 PDEWPKSEHTELNEDQYEADFNWERNQTNSF 785
PDEWPKSEHTEL +DQYEA +NWE F
Sbjct: 201 PDEWPKSEHTELEDDQYEAPYNWEAKPNKFF 231
Score = 152 bits (369), Expect = 5e-37
Identities = 67/86 (77%), Positives = 82/86 (95%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDVKC++EQ
Sbjct: 52 LEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRDE 507
TRHVTTADLKSS+ +V+PVTSR++ E
Sbjct: 112 TRHVTTADLKSSNAKVLPVTSRNQGE 137
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 47.2 bits (107), Expect = 3e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAETPT+AIDWVQLE
Sbjct: 32 NSLRRVFIAETPTLAIDWVQLE 53
>AJ133650-1|CAB38635.1| 275|Drosophila melanogaster RNA polymerase
II p33 subunit protein.
Length = 275
Score = 171 bits (416), Expect = 1e-42
Identities = 76/91 (83%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Frame = +3
Query: 516 DYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK 692
+YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV FEYDPDN MRHTLYPK
Sbjct: 141 EYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK 200
Query: 693 PDEWPKSEHTELNEDQYEADFNWERNQTNSF 785
PDEWPKSEHTEL +DQYEA +NWE F
Sbjct: 201 PDEWPKSEHTELEDDQYEAPYNWEAKPNKFF 231
Score = 152 bits (369), Expect = 5e-37
Identities = 67/86 (77%), Positives = 82/86 (95%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDVKC++EQ
Sbjct: 52 LEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRDE 507
TRHVTTADLKSS+ +V+PVTSR++ E
Sbjct: 112 TRHVTTADLKSSNAKVLPVTSRNQGE 137
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 47.2 bits (107), Expect = 3e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAETPT+AIDWVQLE
Sbjct: 32 NSLRRVFIAETPTLAIDWVQLE 53
>AE014134-2412|AAF53342.1| 275|Drosophila melanogaster CG7885-PA,
isoform A protein.
Length = 275
Score = 171 bits (416), Expect = 1e-42
Identities = 76/91 (83%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Frame = +3
Query: 516 DYGEA-DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK 692
+YGE+ DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV FEYDPDN MRHTLYPK
Sbjct: 141 EYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK 200
Query: 693 PDEWPKSEHTELNEDQYEADFNWERNQTNSF 785
PDEWPKSEHTEL +DQYEA +NWE F
Sbjct: 201 PDEWPKSEHTELEDDQYEAPYNWEAKPNKFF 231
Score = 152 bits (369), Expect = 5e-37
Identities = 67/86 (77%), Positives = 82/86 (95%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RDC+C+DFC ECSVEFTLDVKC++EQ
Sbjct: 52 LEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRDE 507
TRHVTTADLKSS+ +V+PVTSR++ E
Sbjct: 112 TRHVTTADLKSSNAKVLPVTSRNQGE 137
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 47.2 bits (107), Expect = 3e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAETPT+AIDWVQLE
Sbjct: 32 NSLRRVFIAETPTLAIDWVQLE 53
>AE014134-2413|AAN10853.1| 117|Drosophila melanogaster CG7885-PB,
isoform B protein.
Length = 117
Score = 65.7 bits (153), Expect = 7e-11
Identities = 29/36 (80%), Positives = 35/36 (97%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRD 357
+ ANSTVLSDEFLAHRIGLIPLISDDVV++++Y+RD
Sbjct: 52 LEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRD 87
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 47.2 bits (107), Expect = 3e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAETPT+AIDWVQLE
Sbjct: 32 NSLRRVFIAETPTLAIDWVQLE 53
>BT001794-1|AAN71549.1| 117|Drosophila melanogaster RH25219p
protein.
Length = 117
Score = 63.3 bits (147), Expect = 4e-10
Identities = 28/35 (80%), Positives = 34/35 (97%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSR 354
+ ANSTVLSDEFLAHRIGLIPLISDDVV++++Y+R
Sbjct: 52 LEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTR 86
Score = 58.4 bits (135), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQPSV ITEL+D+NVKFV+EDTELSV
Sbjct: 1 MPYANQPSVQITELTDDNVKFVLEDTELSV 30
Score = 47.2 bits (107), Expect = 3e-05
Identities = 20/22 (90%), Positives = 22/22 (100%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAETPT+AIDWVQLE
Sbjct: 32 NSLRRVFIAETPTLAIDWVQLE 53
>AY119625-1|AAM50279.1| 333|Drosophila melanogaster LP03982p
protein.
Length = 333
Score = 46.8 bits (106), Expect = 4e-05
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
D+ILI +LR G EL LR A KG G++HAK++P A ++ P
Sbjct: 188 DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230
Score = 36.7 bits (81), Expect = 0.038
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GL+PL +D + Y + + ++EF L VKC+
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELKVKCS 140
>AE014134-823|AAF52185.1| 333|Drosophila melanogaster CG3756-PA
protein.
Length = 333
Score = 46.8 bits (106), Expect = 4e-05
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
D+ILI +LR G EL LR A KG G++HAK++P A ++ P
Sbjct: 188 DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230
Score = 36.7 bits (81), Expect = 0.038
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GL+PL +D + Y + + ++EF L VKC+
Sbjct: 89 NTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELKVKCS 140
>AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-PA,
isoform A protein.
Length = 4345
Score = 33.1 bits (72), Expect = 0.46
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 594 KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 716
K FGK HA W+ + FEY+ + HTL+ W K+E
Sbjct: 1642 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1678
>AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-PB,
isoform B protein.
Length = 4374
Score = 33.1 bits (72), Expect = 0.46
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 594 KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 716
K FGK HA W+ + FEY+ + HTL+ W K+E
Sbjct: 1671 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1707
>BT001595-1|AAN71350.1| 559|Drosophila melanogaster RE28319p
protein.
Length = 559
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 530 CFTIIGLASSLCRDVTGTTLGSLDFKSAVVTCLVCSSVHFTS 405
C + LA + C VTG+TL +L +S +TCL+ + S
Sbjct: 286 CIQLECLAVNFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKS 327
>AY069210-1|AAL39355.1| 511|Drosophila melanogaster GH26184p
protein.
Length = 511
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 530 CFTIIGLASSLCRDVTGTTLGSLDFKSAVVTCLVCSSVHFTS 405
C + LA + C VTG+TL +L +S +TCL+ + S
Sbjct: 238 CIQLECLAVNFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKS 279
>AE014297-4385|AAF56899.2| 515|Drosophila melanogaster CG2010-PA,
isoform A protein.
Length = 515
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 530 CFTIIGLASSLCRDVTGTTLGSLDFKSAVVTCLVCSSVHFTS 405
C + LA + C VTG+TL +L +S +TCL+ + S
Sbjct: 242 CIQLECLAVNFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKS 283
>AE014297-4384|AAN14173.1| 511|Drosophila melanogaster CG2010-PB,
isoform B protein.
Length = 511
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 530 CFTIIGLASSLCRDVTGTTLGSLDFKSAVVTCLVCSSVHFTS 405
C + LA + C VTG+TL +L +S +TCL+ + S
Sbjct: 238 CIQLECLAVNFCNKVTGSTLKTLIQRSKRLTCLLMNGTSLKS 279
>AY075191-1|AAL68060.1| 623|Drosophila melanogaster AT13424p
protein.
Length = 623
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 404 NVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELALTVPNRWP 231
N ++ H +Q T S L T++D R + A + SLK ++ PN+ P
Sbjct: 97 NKHNQSHDQQNDTCKPSCSKLTTDCTTNDEPSCRGNKSASDKSLKITRCSIPEPNKSP 154
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,531,002
Number of Sequences: 53049
Number of extensions: 776582
Number of successful extensions: 1850
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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