Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120376.Seq
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 126 HITELSDENVKFVVEDTELSVQTV 197
           HIT +  +  K V EDTEL++QT+
Sbjct: 12  HITPVFTKQKK-VKEDTELNLQTI 34


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 599 TFFCICPKLQFLTLA*LNDQYFICFTIIG-LASSLCRD 489
           T +C+ P  +   L    D+  IC T IG L+ +L +D
Sbjct: 198 TRYCLTPTERLEALCWTQDEDIICSTPIGNLSHALLKD 235


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 612 HAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWERNQTNS 782
           H++ +  A  S   +     + T   + ++  KSEH E  ++ Y A F+ +   + S
Sbjct: 747 HSEASANANSSTSSEESREEKATTSLEAEKREKSEHCEKGKEYYAASFHTDIGNSQS 803


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 599 TFFCICPKLQFLTLA*LNDQYFICFTIIG-LASSLCRD 489
           T +C+ P  +   L    D+  IC T IG L+ +L +D
Sbjct: 145 TRYCLTPTERLEALCWTQDEDVICSTPIGNLSHALLKD 182


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = -1

Query: 452 SAVVTCLVCS-SVH 414
           S ++TCL+CS SVH
Sbjct: 8   SLLITCLICSPSVH 21


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 392 TLHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELALTVPN 240
           TL     + H +  E L++       S ++     K+S +KT E   T PN
Sbjct: 638 TLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPN 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,465
Number of Sequences: 438
Number of extensions: 4885
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)