Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120372.Seq
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    87   4e-18
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    68   2e-12
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    30   0.33 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   7.1  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    26   7.1  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
 Frame = +1

Query: 241 KEGALYVYQGEDSLMHFCWKDRT--TGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXX 414
           ++G +Y+    D L+HF WK+R   + EVEDD +IFP++ EF +++ECTTGRVY      
Sbjct: 42  RKGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPEEAEFIKIDECTTGRVYALKFKS 101

Query: 415 XXXXXXXWMQEPKADKDEEYCRRINEALNNPLH 513
                  WMQE   +KD+E    IN+ + +P++
Sbjct: 102 SSQIHFYWMQEYSDEKDKETASLINQLIADPVN 134


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = +1

Query: 256 YVYQGEDS--LMHFCWKDRTTGE-VEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXX 426
           Y+    D+  L+HF W  R   E  EDD+++F  +C F +V ECTTGR Y+         
Sbjct: 28  YIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHS 87

Query: 427 XXXWMQEPKADKDEEYCRRINEALNN 504
              WMQE   D D  Y  RIN  + +
Sbjct: 88  LFYWMQEASDDNDTSYAERINSYIKD 113


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 375 FIHTRKFTIIRKYKQVILNLPRSSVFPTKVHERIFSLVNI 256
           ++  RK   +RK++     +P  S  P KV   IFSL+++
Sbjct: 4   YVKPRKNEFLRKFENFYFEIPFLSKLPPKVSVPIFSLISV 43


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 315 PRSSVFPTKVHERIFSLVNIQSPFLLSGCTIR 220
           P  S    K+HE  FS+ N+    LL GCT+R
Sbjct: 420 PSESTNGRKIHEEPFSISNV----LLCGCTLR 447


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 465 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 322
           +LV  WL +PE   +++ LE  Y N     F+   K   IR  ++ +L
Sbjct: 392 VLVDKWLENPETLEVKEVLEKRYAN--LNIFVGCDKMDPIRGIREKLL 437


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 321 NLPRSSVFPTKVHERIFSLVNIQSPFLLSGCTIRP 217
           N+P  S+ P ++HE +F   N Q  +LL+     P
Sbjct: 414 NVPAISLKPGELHESVFFSENEQIDYLLTSIDYLP 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,280
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)