Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120372.Seq
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)                      139   3e-33
SB_8841| Best HMM Match : DUF938 (HMM E-Value=9.7)                     29   4.3  
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)                 28   7.5  

>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
          Length = 401

 Score =  139 bits (336), Expect = 3e-33
 Identities = 56/93 (60%), Positives = 71/93 (76%)
 Frame = +1

Query: 229 TSRQKEGALYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXX 408
           T+ +++G +Y++Q EDSLMHFCWKDRT+G+VEDDL+IFPDD E+ RV +CTTGRVY+   
Sbjct: 33  TADKRKGQVYIHQSEDSLMHFCWKDRTSGKVEDDLIIFPDDIEYKRVKQCTTGRVYILKF 92

Query: 409 XXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 507
                    WMQEPK DKDEEYC ++N  LNNP
Sbjct: 93  KSSSRKFFFWMQEPKTDKDEEYCTKVNSLLNNP 125



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/75 (33%), Positives = 37/75 (49%)
 Frame = +2

Query: 119 MSTALFGNTXXXXXXXXXNKHIVEFRAGRMTLKGRMVHPDKRKGLCMFTKEKILSCTFVG 298
           M+ +LFG T         +K+++EFRAG+M LKG  V  DKRKG     + +     F  
Sbjct: 1   MAASLFGPTARSS-----SKNLLEFRAGKMNLKGTTVTADKRKGQVYIHQSEDSLMHFCW 55

Query: 299 KTELRGRLRMTCLYF 343
           K    G++    + F
Sbjct: 56  KDRTSGKVEDDLIIF 70


>SB_8841| Best HMM Match : DUF938 (HMM E-Value=9.7)
          Length = 217

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 420 RKQLELEYINSACGAFIH-TRKFTIIRKYKQVILNLPRSSVFPTKV-HERIFSLVNIQSP 247
           R    LEY++ AC A+IH T K   +++ + ++        FP  + ++R+  L N++SP
Sbjct: 45  RLNFTLEYLDVACPAYIHFTAKLRHLQQ-QGLLFTRQLPLDFPNYIQYDRVRELPNLESP 103


>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
          Length = 505

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -1

Query: 441 HPEEALLRKQLELEY---INSACGAFIHTRKFTIIRKYKQVILNLPRSSVFPTKVHERIF 271
           HP E  L   +   +   +N+    F++TR +T+   +    LN P  +   T++   + 
Sbjct: 341 HPNEYFLTDTVLTFFNTRLNTPVLTFVNTRLYTLFLTFVITRLNTPVLTFVNTRLDTPVL 400

Query: 270 SLVN--IQSPFL 241
           +L+N  + +PFL
Sbjct: 401 TLINTRLDTPFL 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,221,887
Number of Sequences: 59808
Number of extensions: 417321
Number of successful extensions: 1084
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)