Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120372.Seq
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    92   4e-19
U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical p...    30   2.2  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    29   2.9  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    29   2.9  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 44/112 (39%), Positives = 62/112 (55%)
 Frame = +1

Query: 172 KQTHSRISCWSYDVERSYGTSRQKEGALYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDD 351
           K   SR+   S D  R    +  K+G +++ Q  D L+HFCWKDR TG V DDL+IFPDD
Sbjct: 22  KAGRSRLEAGSGDTMRKV-VAEPKKGLVFIKQSNDMLIHFCWKDRETGAVVDDLIIFPDD 80

Query: 352 CEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 507
            EF  V  C  G+VY+            W+Q+   D D++  +++ +ALN P
Sbjct: 81  AEFKAVPGCPDGKVYM-LKFKSGDMKLFWIQDSTPDVDKDLVKKVTDALNKP 131


>U50312-10|AAY86208.1|  356|Caenorhabditis elegans Hypothetical
           protein B0222.11 protein.
          Length = 356

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 658 PIVPKREVIPPTGPTPPNNCI 596
           P  PK + +PPT P+ P NCI
Sbjct: 44  PASPKCQCLPPTTPSTPPNCI 64


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 166 RRKQTHSRISCWSYDVERSYGTSRQKEGALYVYQGEDSLMH 288
           R +  HS      YD+E S+GT       LY  +GED   H
Sbjct: 528 RGQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGEDRASH 568


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 166 RRKQTHSRISCWSYDVERSYGTSRQKEGALYVYQGEDSLMH 288
           R +  HS      YD+E S+GT       LY  +GED   H
Sbjct: 511 RGQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGEDRASH 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,649
Number of Sequences: 27780
Number of extensions: 312741
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)