Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120372.Seq
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26590.1 68415.m03190 adhesion regulating molecule family sim...    86   3e-17
At4g20190.1 68417.m02952 hypothetical protein                          30   2.0  
At4g18930.1 68417.m02790 cyclic phosphodiesterase identical to c...    29   2.7  
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi...    29   3.5  
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi...    29   4.6  
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas...    28   6.1  
At1g17850.1 68414.m02209 expressed protein                             28   6.1  

>At2g26590.1 68415.m03190 adhesion regulating molecule family
           similar to oocyte membrane protein (GI:6174842) [Xenopus
           laevis]; similar to Adhesion regulating molecule 1
           precursor (110 kDa cell membrane glycoprotein) (Gp110)
           (Swiss-Prot:Q16186) [Homo sapiens]; contains Pfam
           PF04683: Adhesion regulating molecule conserved region
          Length = 300

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 37/96 (38%), Positives = 57/96 (59%)
 Frame = +1

Query: 241 KEGALYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXX 420
           ++G + + +G++ L+HF W DR    VEDD ++FPD+  F +VN+ ++ RVY+       
Sbjct: 34  RKGLVRIARGDEGLIHFQWLDRNQNTVEDDQIVFPDEALFEKVNQ-SSDRVYILKFNSDD 92

Query: 421 XXXXXWMQEPKADKDEEYCRRINEALNNPLHLVGVE 528
                WMQEP+A+ D E C  +N+ LN PL   G E
Sbjct: 93  RKLFFWMQEPRAEGDAELCSSVNQYLNQPLEFPGEE 128



 Score = 35.5 bits (78), Expect = 0.040
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 182 IVEFRAGRMTLKGRMVHPDKRKGL 253
           ++EFRAG+M+L+G  V PD RKGL
Sbjct: 14  MLEFRAGKMSLQGTRVVPDARKGL 37


>At4g20190.1 68417.m02952 hypothetical protein 
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 295 WKDRTTGEVEDDLLIFPDDCEFTRVNECTTGR 390
           WKDRTT +V D +L+      F R   C  GR
Sbjct: 104 WKDRTTEQVLDLMLVQDAATAFRRSKSCGEGR 135


>At4g18930.1 68417.m02790 cyclic phosphodiesterase identical to
           cyclic phosphodiesterase [Arabidopsis thaliana]
           gi|2065013|emb|CAA72363
          Length = 181

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 229 YHTTFQRHTTSTKFYY-VFVSS*TSPKTRRIAKQCSRHFTMICSVTVNP*STLTLYSKLF 53
           Y  T  R +T T F+  VF+   T+P+     + C  HF    +    P  +L LY++L 
Sbjct: 70  YTATVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPYMPHLSL-LYAELT 128

Query: 52  E 50
           E
Sbjct: 129 E 129


>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein similar to
           SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
           1.1.1.60) (Tartronate semialdehyde reductase)
           {Escherichia coli}; contains Pfam profile PF03446: NAD
           binding domain of 6-phosphogluconate dehydrogenase
          Length = 318

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 RISCWSYDVERSYGTSRQKEGALYVYQGEDS 279
           R +CW+ D   S G +  +EG L ++ G DS
Sbjct: 144 RRNCWAVDAPVSGGDAGAREGTLGIFAGGDS 174


>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
           NAD-binding domain-containing protein contains Pfam
           profile: PF03446 NAD binding domain of
           6-phosphogluconate
          Length = 299

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 187 RISCWSYDVERSYGTSRQKEGALYVYQGEDS 279
           R  CW+ D   S G +  +EG L ++ G DS
Sbjct: 123 RRDCWAVDAPVSGGDAGAREGKLTIFAGGDS 153


>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 275 SSPW*TYRAPSFCLDVPYDLSTSYDQHEILLCVCFLLNFPQD 150
           +S W   +  S  +   +DLS    +HE+ LC  +   FP+D
Sbjct: 389 ASLWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPED 430


>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 121 VYCTVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQKE 246
           ++C +W Y W  G FR       + C+      S+G S +KE
Sbjct: 194 IWCEIWCYEWDVGHFRGAH-RPEVDCFR---NTSFGLSDEKE 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,633
Number of Sequences: 28952
Number of extensions: 281670
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)