Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.21 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.0  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 374 GDTSNIVLLGPNLDLSLGNIL*HNLVEVSSCEL 276
           GD S I  L PNLD++ GN+   N +++ +  L
Sbjct: 60  GDDSRIKHLEPNLDVNQGNLKKFNALKLKNPNL 92


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 369 VTLPIFESYQDGSDTYEL 422
           VT+  F SYQ G+ TY L
Sbjct: 160 VTIIFFASYQYGTKTYSL 177


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 369 VTLPIFESYQDGSDTYEL 422
           VT+  F SYQ G+ TY L
Sbjct: 160 VTIIFFASYQYGTKTYSL 177


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -3

Query: 325 LVTF-CSTTWLKSP 287
           LV F CST WLK P
Sbjct: 306 LVNFDCSTMWLKDP 319


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 607  CTFQPGN--DYVLNGVDTSIRDLNNLVES 527
            CT++  N  +  L  +  S+RDLN  +ES
Sbjct: 1090 CTYKADNKENEQLRKIQESLRDLNRKIES 1118


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 607  CTFQPGN--DYVLNGVDTSIRDLNNLVES 527
            CT++  N  +  L  +  S+RDLN  +ES
Sbjct: 1090 CTYKADNKENEQLRKIQESLRDLNRKIES 1118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,700
Number of Sequences: 336
Number of extensions: 3434
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)