Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    78   2e-15
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   8.7  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   8.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.7  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 36/69 (52%), Positives = 53/69 (76%)
 Frame = +2

Query: 455 KAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 634
           KA++   +  E   +++  Q++FV L +V+++TNRRVN+IEH+IIPRLE T+ YI SEL+
Sbjct: 135 KARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELE 194

Query: 635 ELEREEFYR 661
           ELERE+F R
Sbjct: 195 ELEREDFTR 203



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 37/87 (42%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
 Frame = +3

Query: 252 SAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELA 425
           +AFS+AE  F  G+  N  + Q+V + ++++RSK++N++GV LP FE   D S D ++L 
Sbjct: 65  AAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLT 124

Query: 426 GLARGGQQLAKLKKNFQSAVKLLVELA 506
           GL +GGQQ+ K ++ ++ AV+ LV+LA
Sbjct: 125 GLGKGGQQIQKARQVYEKAVETLVQLA 151



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = +1

Query: 61  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 240
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 241 VMKEA 255
           VM+ A
Sbjct: 61  VMQIA 65


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = +1

Query: 115 IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEALSLWLKLSSQLET 294
           +K  LA  V  HG L  +  +  +  +M + ++    T+    +++ L+LW +L++ + T
Sbjct: 336 LKKYLAKYVAHHGKLINETTSQALEGKMAVGRLSSNATMATLWVQKVLALWDRLNTIIST 395

Query: 295 S 297
           +
Sbjct: 396 T 396


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 521 FVT-LDEVIKITNRRVNAIEHVII 589
           FVT  D+V+KI  +R   ++H++I
Sbjct: 87  FVTKFDQVLKILEKRAPTVDHILI 110


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 85  IFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMK--EAL 258
           I PS    +    + +    G  +L K++      F+MI+SK  ETK    EV+   EA 
Sbjct: 589 IMPSESKNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNRETKRYDFEVLSALEAA 648

Query: 259 SLWLKLSSQLETSTKL 306
            +  ++ + + T  K+
Sbjct: 649 IIVSRIRALMNTVKKI 664


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 313  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 429
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,616
Number of Sequences: 5004
Number of extensions: 54308
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)