Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                         85   7e-17
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    30   2.2  
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062...    29   3.9  
06_02_0342 + 14789190-14789205,14789868-14789891,14789968-147901...    29   5.2  
05_04_0062 + 17607290-17608852                                         29   5.2  
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    29   5.2  
11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672     28   9.1  
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381...    28   9.1  

>04_04_1340 + 32766773-32767582
          Length = 269

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 42/72 (58%), Positives = 54/72 (75%)
 Frame = +2

Query: 446 AACKAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIIS 625
           AAC+A     +  E    ++ LQTSF+TLDE IK TNRRVNA+E+V+ PRLE T++YI  
Sbjct: 142 AACRAAHV--KAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKG 199

Query: 626 ELDELEREEFYR 661
           ELDELERE+F+R
Sbjct: 200 ELDELEREDFFR 211



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
 Frame = +3

Query: 252 SAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD--------G 404
           S+FSLAEAK+  GD    VVLQ+V  A +++RS ++NVAGV LP F  + D         
Sbjct: 66  SSFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPS 125

Query: 405 SDTYELAGLARGGQQLAKLKKNFQSAVKLLVELA 506
           + +  L GLARGGQQ+A  +     A+++LVELA
Sbjct: 126 NASPSLTGLARGGQQVAACRAAHVKAIEVLVELA 159



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
 Frame = +1

Query: 61  MSGK-DRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 237
           MSG+  RL + P+     ++K RL GA +GH LLKKK+DAL V+FR IL KI+  K  MG
Sbjct: 1   MSGQTQRLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMG 60

Query: 238 EVMK 249
           E M+
Sbjct: 61  EAMR 64


>12_01_0151 -
           1158834-1159703,1159917-1160092,1160144-1162097,
           1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +1

Query: 61  MSGKDRLAIFPSRGAQML--IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLM 234
           M  K +LA+F  + A  +  IK R A  V+  G +    +A+ +   +  +KII   +L+
Sbjct: 95  MRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLL 154

Query: 235 GEVMKEALSLWLKLSSQL 288
           G V    + +   +S++L
Sbjct: 155 GNVDDSKIHMVEAISNEL 172


>02_05_0862 -
           32305562-32305654,32305935-32306033,32306178-32306259,
           32307407-32307764,32308745-32309521,32309612-32309716,
           32309803-32309911,32311016-32311024
          Length = 543

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 577 ARNHSPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPG 732
           A +  PA +  RVH +  G   + G  P  E+  +EE+++G G +      G
Sbjct: 11  ATDPDPAPSPLRVHGIGIGSHASRGTAPRGEEEEEEEEWRGDGDAGSEEEEG 62


>06_02_0342 +
           14789190-14789205,14789868-14789891,14789968-14790128,
           14790218-14790335,14790658-14790735,14790819-14790938,
           14791380-14791430,14791576-14791883
          Length = 291

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 220 TKTLMGEVMKEALSLWLKLSSQLETSTKLCYKMLPRLKSRLGPRR 354
           T  + GE++KEA +LW KL   +  + +     +  L+ +  P+R
Sbjct: 67  TSDIAGELVKEAKTLWEKLRDGISCTNQEVMAAVDYLRRKAQPKR 111


>05_04_0062 + 17607290-17608852
          Length = 520

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +2

Query: 401 WF*YL*VGWFGPWWAAACKAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEH 580
           WF  L VGW     AAA K Q EL         V      +  + E +  T  +V  +  
Sbjct: 126 WFSELDVGWLLRSAAAADKEQSEL----GLADLVRRWTRGYTVMAEALSATQTKVAGVPA 181

Query: 581 VIIPRLERTLAYII--SELDELEREEFYR 661
           +I+P+ +R    I+   EL++  R +F R
Sbjct: 182 IILPQAQRDHNNIMCDQELEDDLRLQFAR 210


>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 267 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 356
           AE+KF   G  N  ++QN+T+ ++ ++ KKD
Sbjct: 25  AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55


>11_06_0573 + 25088921-25089035,25089752-25089843,25089990-25091672
          Length = 629

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 61  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQV 186
           +   DRLAI P   + +   G L  +V+G G+  +K  +L V
Sbjct: 153 LGADDRLAIVPFHSSVVDATGLLEMSVEGRGVASRKVQSLAV 194


>07_03_1198 +
           24734985-24735169,24737897-24737975,24738070-24738134,
           24738214-24738313,24738429-24738470,24739062-24739100,
           24739140-24739330,24739745-24739850
          Length = 268

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 148 HGLLKKKADALQVRFRMILSKIIETKTL 231
           +G+LK K DALQ   R +L + ++T T+
Sbjct: 95  YGILKSKLDALQKSQRQLLGEQLDTLTI 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,058
Number of Sequences: 37544
Number of extensions: 375671
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)