Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   9e-20
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   4.0  
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            29   4.0  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   5.3  
SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 28   7.0  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 45/69 (65%), Positives = 54/69 (78%)
 Frame = +2

Query: 455 KAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 634
           K QE   +  +    ++ LQTSFVTLDE IK+TNRRVNAIEHVIIPR+E T++YI+ ELD
Sbjct: 38  KCQEVYGKAVKLLVELASLQTSFVTLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELD 97

Query: 635 ELEREEFYR 661
           E EREEFYR
Sbjct: 98  EREREEFYR 106



 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 35/53 (66%), Positives = 44/53 (83%)
 Frame = +3

Query: 348 KKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKKNFQSAVKLLVELA 506
           +KDNVAGV LPIFE   DG+++YEL GL+RGGQQL+K ++ +  AVKLLVELA
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELA 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -1

Query: 441 HHGPNQPTHRYQNHPGMTQRLGG*HQQH 358
           +H   Q THRY  HP +T R    HQQH
Sbjct: 232 YHQHPQVTHRYHQHPQVTHRY---HQQH 256


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 419 VGWFGPWWAAACKAQEEL 472
           VGWF P W  AC A+ +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 55  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKII 216
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +  + ++
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVL 158


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 160  KKKADALQVRFRMILSKIIETKTLMGEVMKEALSLWLKLSSQLETSTKL 306
            KK+A  LQV +  +  ++ ET+  + E  ++ +S  L +  +L TS +L
Sbjct: 1802 KKRASCLQVDYENVRDELAETRRALAEAEEKNVS--LSIQEELVTSKQL 1848


>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 284 CELSFSQRESASFITSPIRVLVSMI--LLKIIRNLT*RASAFFLRRPWPFTAPARRPLIN 111
           CE  F Q+ S SFI SP+   +  +  +LK+  +     SAF  ++PW  T   R+ +  
Sbjct: 398 CE-QFIQQVSESFI-SPLSAFIGKVNVILKLAEDEGKDKSAFLRQQPWVNTESVRKVVSE 455

Query: 110 IWAPREGKI 84
            +   + K+
Sbjct: 456 TYMMLKSKL 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,255,770
Number of Sequences: 59808
Number of extensions: 427467
Number of successful extensions: 1121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)