Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   120   8e-28
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   3.5  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   3.5  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  120 bits (290), Expect = 8e-28
 Identities = 52/87 (59%), Positives = 71/87 (81%)
 Frame = +3

Query: 246 ERSAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 425
           + +AFSLAEAKFT GDF+  V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L 
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124

Query: 426 GLARGGQQLAKLKKNFQSAVKLLVELA 506
           GL +GG  +A+LKKN+  A++LLVELA
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELA 151



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 47/63 (74%), Positives = 52/63 (82%)
 Frame = +1

Query: 67  GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 246
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 247 KEA 255
           KEA
Sbjct: 65  KEA 67



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 43/77 (55%), Positives = 56/77 (72%)
 Frame = +2

Query: 431 GPWWAAACKAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTL 610
           G   A   + ++   +  E    ++ LQT F+TLDE IK+TNRRVNAIEHVIIPR+E TL
Sbjct: 127 GKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIENTL 186

Query: 611 AYIISELDELEREEFYR 661
            YI++ELDE+EREEF+R
Sbjct: 187 TYIVTELDEMEREEFFR 203


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +3

Query: 324 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQS 479
           K  IKI  +  ++  +   +FE+    +D +   ELA L  G Q+L K+KK+F++
Sbjct: 21  KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFET 75


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 94  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAL 258
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE +
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKERI 141


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 94  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAL 258
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE +
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKERI 245


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 455 KAQEELPERCEAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 634
           KAQ++L E    FG    L       ++  +  N  +  IEHV +  L +    +  EL 
Sbjct: 384 KAQKQLREALGKFGHEE-LTKKLAEAEDKRESLNIEIEEIEHVQLKALRKKYEKLTKELR 442

Query: 635 ELEREEF 655
             E E+F
Sbjct: 443 NEEEEKF 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,093
Number of Sequences: 27780
Number of extensions: 310601
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)