Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 262 LWLKLSSQLETSTKLCYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLI 411
           LWL     L   +KL   +   +K    P  T +     +SLSHT   L+
Sbjct: 112 LWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLV 161


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 343 GPRRTMLLVSPSQSLSHTRMVLIPMSWLVWPVVGSSL 453
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 305 CATKCYQGSNQD*VQEGQCCW 367
           C+  C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 209 LLKIIRNLT*RASAFFLRRPWPFTAPAR 126
           L+  I ++      FFLR+ +PF  P++
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWLPSK 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,225
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)