Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120371.Seq
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...    83   2e-16
At2g32970.1 68415.m04041 expressed protein                             31   0.61 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   1.1  
At5g41020.1 68418.m04986 myb family transcription factor contain...    29   3.3  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    29   3.3  
At5g06730.1 68418.m00761 peroxidase, putative similar to peroxid...    29   4.3  
At3g19190.1 68416.m02436 expressed protein                             28   7.6  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 39/86 (45%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +3

Query: 252 SAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAG 428
           S+F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G    +L G
Sbjct: 66  SSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDLTG 125

Query: 429 LARGGQQLAKLKKNFQSAVKLLVELA 506
           LARGGQQ+   +  +  A+++LVELA
Sbjct: 126 LARGGQQVRACRVAYVKAIEVLVELA 151



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/59 (62%), Positives = 48/59 (81%)
 Frame = +2

Query: 485 EAFGRVSVLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFYR 661
           E    ++ LQTSF+TLDE IK TNRRVNA+E+V+ P+LE T++YI  ELDELERE+F+R
Sbjct: 145 EVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKLENTISYIKGELDELEREDFFR 203



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +1

Query: 61  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 237
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 238 EVMK 249
           ++MK
Sbjct: 61  DMMK 64


>At2g32970.1 68415.m04041 expressed protein
          Length = 577

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/68 (22%), Positives = 36/68 (52%)
 Frame = +1

Query: 238 EVMKEALSLWLKLSSQLETSTKLCYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLIPM 417
           ++++  L LW  L+  + +   + + ++    + +G    ++L+  S   + T  VL+P+
Sbjct: 374 DILELLLPLWNSLAETVASLVSVVWIVMESGCNLVGDVVELVLLPISLVWNVTNTVLLPL 433

Query: 418 SWLVWPVV 441
            W++W VV
Sbjct: 434 FWIIWEVV 441


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 279 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 458
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 459 LKKNFQSAVKLLVE 500
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At5g41020.1 68418.m04986 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 588

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 118 KGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEALSLWLKLSSQLETS 297
           +GRLAG  KGH + ++  +   +  + +  K  + K     ++K+ +  W+ +S  LET 
Sbjct: 420 RGRLAGKKKGHWMREEYQNLFDLVNKDLRMKAFKEKHSKHGMLKDNIP-WMAISDVLETR 478

Query: 298 TKL--CYKMLPRLKS 336
             +  C K   +L S
Sbjct: 479 DHVTCCQKWYEQLIS 493


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 592 GNDYVLNGVDTSIRDLNNLVESDK*SLQDANSTKSFTA-LWKFFLSFASCCPPRAKPANS 416
           G  +++  ++T    L +L  + K ++ +  S     A LW+    F +C P    PANS
Sbjct: 408 GPQHLVADLETCSLHLKHLAAAAKDAVAEGGSVPGCRARLWRRIREFNACIPYTGVPANS 467

Query: 415 *VSE 404
            V E
Sbjct: 468 EVPE 471


>At5g06730.1 68418.m00761 peroxidase, putative similar to peroxidase
           [Arabidopsis thaliana] gi|1491617|emb|CAA68212
          Length = 358

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 589 NDYVLNGVDTSIR-DLNNLVESDK*SLQDANSTKSFTALWKFFLSFASCCP 440
           +D  +NG D S+  D  + ++S+K +  +ANST+ F  +     +  + CP
Sbjct: 73  HDCFVNGCDGSLLLDDTSSIQSEKNAPANANSTRGFNVVDSIKTALENACP 123


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 487 FTALWKFFLSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 353
           F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 320 FLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,192
Number of Sequences: 28952
Number of extensions: 296074
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)