Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120369.Seq
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.4  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    27   3.2  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   4.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   7.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   7.4  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.8  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.8  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   9.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 280 NNAAVLRSQNRMLAEEVNKKNERISVLEREKSALIRELLLQRNRSKI 420
           N  +VLR++N  L   +  +N+R   L  E  +L R     + +SKI
Sbjct: 91  NLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQSKI 137


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 711 YSTVQWERILNNVWCAICCAISLKLYAYTAS 803
           +S + W  IL  +WC  C   S  LYAY  S
Sbjct: 147 FSLMGW--ILFGIWCLTCFLSSFILYAYHES 175


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 261 GEDEAGKAKFICRERGPCLQPALTLLIVDLIPKPLRAVVPA 139
           G D A K   + R  G  ++ A +  +  LIP+PL++ V A
Sbjct: 225 GMDVARKVTILSRIAGVHVESASSFPVKSLIPEPLKSAVNA 265


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -1

Query: 761  YCTPYIVKDTFPLYCTIYYWLSICCYAMWHYSIA*FESSFMPSHTIYFEMTLIVMIFENA 582
            +C P +VK  F  Y   +Y +S   YA+ H S+   +  ++ S      + +++     A
Sbjct: 993  WCFPNVVKHDFYAYAIGFYSISFPMYAI-HASVKFLKLDYLRSLMNKLNLKIVMRSLVMA 1051

Query: 581  MK 576
            +K
Sbjct: 1052 LK 1053


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 263 PERTKLAKPNSYAEREDRV 207
           P+ T+ A+P+S++  EDRV
Sbjct: 205 PKATETARPSSFSRNEDRV 223


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 418 FYFYFFVAKVLE-*VQTFLVPKLIFFHSSYSLPLLTYD 308
           FYF+FF+  +L   V  F  P ++FF  +Y   LL  D
Sbjct: 6   FYFFFFLTLILSATVYLFGGPMMLFF-INYKTDLLKVD 42


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 435 VKHNMMESYNTVQLCCYYIQYNYFHLKF 518
           +KH   ++ N V++C Y+  Y+ ++L F
Sbjct: 157 LKHESGKNENQVRVCLYHKHYSRWYLPF 184


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 286 AAVLRSQNRMLAEEVNKKNERISVLEREKSALIRELLLQR 405
           A V + QNR+  E V  K  RI   E   S  IRE+ L +
Sbjct: 15  AHVYKGQNRVTGEIVALKVIRIDADEGTPSTAIREISLMK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,182
Number of Sequences: 5004
Number of extensions: 67130
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)