Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120369.Seq
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    31   1.5  
03_02_0987 - 12995754-12996347,12996440-12997684,12997772-129978...    29   5.9  
12_01_0113 - 864380-865027,865419-866408,867128-867194,868377-86...    28   7.8  

>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 265 THVTSNNAAVLRSQNRMLAEEVNKKNERISVLEREKSALI-RELLLQRNRSK 417
           TH   N  +VLRS+ R L  EV+  N  +  LE + + L    L LQ+ ++K
Sbjct: 568 THALLNQNSVLRSEKRTLVREVDSMNGALLNLEAQFTELEGHHLDLQQEKNK 619


>03_02_0987 -
           12995754-12996347,12996440-12997684,12997772-12997838,
           12997982-12998073
          Length = 665

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +1

Query: 247 SFVLSGTHVTSNNAAVLRSQNRMLAEEVNKKNERISVLEREKSALIRELL 396
           S V SG     ++ A +R +NR L  EV +   R++ LE+++ ++ REL+
Sbjct: 561 SGVGSGAMSPRDSYASVRRENRELKLEVARMRMRLTDLEKDQVSMRRELV 610


>12_01_0113 -
           864380-865027,865419-866408,867128-867194,868377-868468
          Length = 598

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 280 NNAAVLRSQNRMLAEEVNKKNERISVLEREKSAL 381
           +N A LR +NR L  E+ +   R++ LERE+  +
Sbjct: 480 DNYACLRRENRELKLEIARMRVRLTELEREQGVM 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,515,758
Number of Sequences: 37544
Number of extensions: 375462
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)