Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120369.Seq
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z81136-2|CAB03459.1|  743|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z75531-6|CAA99807.1| 1144|Caenorhabditis elegans Hypothetical protein
            C54D10.7 protein.
          Length = 1144

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +1

Query: 277  SNNAAVLRSQNRMLAEEVNKKNERISVLEREKSALIRELLLQRNRSKIIDNFT*NTI 447
            +N   VLRS N+ +AE  N+    IS+++RE      ++ ++R R  I+ N   N++
Sbjct: 966  TNRLNVLRSANKKVAELFNRFFTEISIIQREIEK-SEDISMERKRVSIVLNTLTNSL 1021


>Z81136-2|CAB03459.1|  743|Caenorhabditis elegans Hypothetical
           protein W02B8.3 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 443 VFYVKLSIILLLFLCSKSSRMSADFSR 363
           VFY  LS +LLLF+C K +     F +
Sbjct: 3   VFYYSLSTLLLLFICLKDTYAELKFEK 29


>Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
 Frame = +1

Query: 322 EEVNKK--NERISVLEREKSALIRELLLQRNRSK 417
           + V++K   ERI  LE+EK+ALI E+++ +++SK
Sbjct: 97  DSVSRKCLQERIQKLEQEKAALI-EIMISQHKSK 129


>AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/34 (44%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
 Frame = +1

Query: 322 EEVNKK--NERISVLEREKSALIRELLLQRNRSK 417
           + V++K   ERI  LE+EK+ALI E+++ +++SK
Sbjct: 97  DSVSRKCLQERIQKLEQEKAALI-EIMISQHKSK 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,553
Number of Sequences: 27780
Number of extensions: 369209
Number of successful extensions: 1031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)