Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120369.Seq
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    31   0.70 
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    30   2.1  
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer...    29   2.8  

>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +1

Query: 247 SFVLSGTHVTSNNAAVLRSQNRMLAEEVNKKNERISVLEREKSALIRELLLQRNRSKIID 426
           S  LS T    +N A LR +NR L  E+ +   R++ LE+E   + R++    +R K + 
Sbjct: 512 SGALSATMSPKDNYASLRRENRELKLELARLRMRLNDLEKEHICMKRDMQRSHSR-KFMS 570

Query: 427 NFT 435
           +F+
Sbjct: 571 SFS 573


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 289 AVLRSQNRMLAEEVNKKNERISVLEREKSALIRELL 396
           A LR +NR L  E+++   R+S LE+E + +  E++
Sbjct: 498 AALRRENRELKLEISRMRVRVSELEKEHNLMKHEMM 533


>At4g01970.1 68417.m00262 galactinol-raffinose
           galactosyltransferase, putative similar to
           galactinol-raffinose galactosyltransferase GI:6634701
           from [Vigna angularis]
          Length = 807

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 413 LLFLCSKSSRMSADFSRSKTDILSFFLFTS--SANIRFWDLSTAALFDVT*VPERTKLAK 240
           +LF+ SKS  M      S  D+LSF   T   S+ +RF  L    +F+     +  K+  
Sbjct: 685 ILFMNSKSEAMKITLEPSAFDLLSFVPVTELVSSGVRFAPLGLINMFNCVGTVQDMKVTG 744

Query: 239 PNS 231
            NS
Sbjct: 745 DNS 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,701
Number of Sequences: 28952
Number of extensions: 320628
Number of successful extensions: 852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)