Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120366.Seq
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856... 34 0.16
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 33 0.38
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 31 1.2
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858... 31 1.5
02_05_1245 + 35223504-35224778 31 1.5
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 30 2.7
03_06_0145 - 31973924-31975837 29 3.5
12_02_0389 - 18499372-18499606,18499713-18499882 29 6.2
09_06_0370 - 22610441-22610569,22610659-22611060,22611141-226111... 29 6.2
08_02_1012 + 23550314-23551504 28 8.1
>09_02_0398 +
8559332-8559718,8561264-8561386,8561537-8561581,
8562215-8562290,8562398-8562510,8562774-8562821,
8563101-8563229
Length = 306
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 630 CPIYRRPQFVRSLPLYYSLI*NTTSTELFYYLEQHGGYLFRMSLL 764
CP+ P +P+ S + T+L Y+ E+H G +FR+ LL
Sbjct: 227 CPLRVSPSKTAIMPVNPSFLPQVNVTDLKYFCEEHFGQVFRLKLL 271
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 32.7 bits (71), Expect = 0.38
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = -3
Query: 447 PATRRRQRRYPNNSPDDSPGRSEGK*ERLSTAS*Q-PR-RRLGSTLXXXXXXXXXXXXXX 274
P R+RQRR P G +E K E + A+ Q P L S L
Sbjct: 71 PELRKRQRRTAKEKPSAHEGATEWKPEDVEKAAAQEPEGTELDSGLSPAESRGKRQRGVE 130
Query: 273 KIQRGRQKESSREGKEETSEKDKVRHGPRK 184
K++R +K++++E +ET+EK + P K
Sbjct: 131 KVKRRTRKKTAKEKTKETTEKSAAQ-APEK 159
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 538 DVGPHGGRPGADDVTGVLDVLLPPLVRELSTGDAAAPASI 419
DVGP P ADDV G+ LPPL+ G A S+
Sbjct: 193 DVGP-SSMPMADDVVGLAPCALPPLMDVSGGGGGAGTTSL 231
>10_08_0977 -
21985149-21985277,21985348-21985722,21985824-21985874,
21985964-21986189,21986289-21986359,21986430-21986549,
21986641-21986835,21986921-21986985,21987894-21987984,
21988700-21988761,21988854-21988904,21989172-21989273,
21989873-21989980,21990071-21990134,21990246-21990392
Length = 618
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 523 GGRPGADDVTGVLDVLLPPLVREL 452
GGRPG D + GV D LP +R+L
Sbjct: 358 GGRPGGDRIYGVFDNQLPSALRKL 381
>02_05_1245 + 35223504-35224778
Length = 424
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 708 QSTSCFKLANSIEGESERTEGGG-KLDTRWILFKLRKAVNVEVARAPTCINIR 553
++T ++ + IE EGGG + RW+ +LR + VE A A T + +R
Sbjct: 326 KATGEYERTSVIESAEAAAEGGGGEAMRRWVDRRLRDSFPVEAAEAMTAVALR 378
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 625 LDPVQAEEGRERGGRPSTDLHQYKIVD-ILDVGPHGGRPGADDVTGVLDVLLPPLVREL 452
LD + G + G + T L + D + GGRPG D + GV D LP +++L
Sbjct: 352 LDRLGRPIGGDAGAQLYTILDMCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKL 410
>03_06_0145 - 31973924-31975837
Length = 637
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = -2
Query: 586 GRPSTDLHQYKIVDILDVGPHGGRPGADDVTGVLDVLLPPLVRELSTGDAAAP 428
G STD +VD+ DV H R DD DV+ V L+T AA P
Sbjct: 322 GSTSTD-DGIAVVDVTDVVDHTARSHVDDGGAAADVISVVEVPPLTTVSAAPP 373
>12_02_0389 - 18499372-18499606,18499713-18499882
Length = 134
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 628 ALDPVQAEEGRERGGRPSTDLHQYKIVDILDVGPHGGRPGADDVTGVLDVLL 473
A+DP AE+ R PS+D H +V + G G P V+G+ LL
Sbjct: 11 AMDPPIAEQTRSLDNEPSSDPHHLLLVGL---GFGGNSPPRTSVSGLKHCLL 59
>09_06_0370 -
22610441-22610569,22610659-22611060,22611141-22611191,
22611475-22611700,22612219-22612289,22612411-22612530,
22612618-22612812,22612995-22613059,22613306-22613396,
22613611-22613672,22613796-22613846,22614326-22614427,
22614876-22614939,22615104-22615247
Length = 590
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 625 LDPVQAEEGRERGGRPSTDLHQYKIVD-ILDVGPHGGRPGADDVTGVLDVLLPPLVREL 452
LD + E + G + T L + D + GGR G D + GV D LP R+L
Sbjct: 286 LDTIGKEVAADPGAQLYTILELCRAFDRVFKEHLDGGRSGGDKIYGVFDHKLPAAFRKL 344
>08_02_1012 + 23550314-23551504
Length = 396
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 514 PGADDVTGVLDVLLPPLVRELSTG 443
PGADD+ D+LL R L+TG
Sbjct: 44 PGADDLAAAADILLSAQRRRLATG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,984
Number of Sequences: 37544
Number of extensions: 355111
Number of successful extensions: 1077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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