Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120366.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9)                      29   3.6  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 574 CSGDLHVHGLPQLEQDPTRVQFTAALSSFALSLYTIR*FE 693
           C G +HV+G P    DP  + F A +    + LY +R F+
Sbjct: 256 CQGLMHVNGRPVAAFDPEGLIFAAGIDCEMIKLYDLRSFD 295


>SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9)
          Length = 101

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 580 GDLHVHGLPQLEQDPTRVQFTAALSSFALSLYTIR*FETRRRLNYFIIWNSTAVTCSACL 759
           G +HV+G P    DP  + F A +    + LY +R F+      + I  +      S   
Sbjct: 1   GLMHVNGRPVAAFDPEGLIFAAGIDCEMIKLYDLRSFDKGPFSTFHIQTDPNIEWNSIKF 60

Query: 760 SYGGRVL 780
           SY G+++
Sbjct: 61  SYDGKMI 67


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 255 QKESSREGKEETSEKDKVRHGPRK 184
           + E  REG  E+ E ++VR GPR+
Sbjct: 246 ESERVREGPRESRESERVREGPRE 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,114,132
Number of Sequences: 59808
Number of extensions: 371367
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)