Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120366.Seq
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchang...    28   9.6  

>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 717 KIVQSTSCFKLANSIEGESERTEGGGKLDTRWILFK 610
           K+    S   L NS+E   + +E  GKL+T WI FK
Sbjct: 329 KVANGKSIKFLENSLEAFFKFSEYTGKLETTWIKFK 364


>Z81497-2|CAB04078.1|  781|Caenorhabditis elegans Hypothetical
           protein F10C2.5 protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 612 KLRKAVNVEVARAPTCINIRSSIFSMWVRMVGGL 511
           + R+AV++ + +A    N+  S+F   +R+VGGL
Sbjct: 100 EFRRAVSLVLEKARDDANVNVSVFETNIRVVGGL 133


>AF016420-4|AAB65308.1|  703|Caenorhabditis elegans Na/ca exchangers
           protein 8 protein.
          Length = 703

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 209 SFSLVSSFPSRELSFCRPLWIFDFF 283
           SF +  + PS E+S+C+PL++   F
Sbjct: 464 SFFMKMTIPSNEMSWCKPLFLLHCF 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,507,023
Number of Sequences: 27780
Number of extensions: 275317
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)