Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120366.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60190.1 68416.m06724 dynamin-like protein E (DL1E) nearly id...    29   2.9  
At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly id...    29   2.9  
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea...    29   3.9  
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    29   3.9  
At2g17840.1 68415.m02066 senescence/dehydration-associated prote...    29   3.9  
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat...    28   6.8  
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat...    28   6.8  

>At3g60190.1 68416.m06724 dynamin-like protein E (DL1E) nearly
           identical to dynamin-like protein E [Arabidopsis
           thaliana] GI:19423872; contains Pfam profiles PF01031:
           Dynamin central region, PF00350: Dynamin family,
           PF02212: Dynamin GTPase effector domain
          Length = 624

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 523 GGRPGADDVTGVLDVLLPPLVREL 452
           GGRPG D + GV D  LP  +++L
Sbjct: 358 GGRPGGDRIYGVFDNQLPAALKKL 381


>At1g14830.1 68414.m01774 dynamin-like protein C (DL1C) nearly
           identical to dynamin-like protein C [Arabidopsis
           thaliana] GI:19569772
          Length = 614

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 523 GGRPGADDVTGVLDVLLPPLVREL 452
           GGRPG D + GV D  LP  +++L
Sbjct: 353 GGRPGGDRIYGVFDHQLPAALKKL 376


>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
           family protein similar to Will die slowly protein
           (SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
          Length = 330

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 574 CSGDLHVHGLPQLEQDPTRVQFTAALSSFALSLYTIR*FETRRRLNYFIIWNSTA 738
           C G LH+ G P +  D   + F  A+   A+ L+  R ++ +   + F++   TA
Sbjct: 148 CQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYD-KGPFDTFLVGGDTA 201


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 267 QRGRQKESSREGKEETSEKDKVRHGPR 187
           +R R++E  R  +++  E+DKVR G R
Sbjct: 72  KRDRERERHRSSRDKDRERDKVREGSR 98


>At2g17840.1 68415.m02066 senescence/dehydration-associated
           protein-related (ERD7) similar to senescence-associated
           protein 12 [Hemerocallis hybrid cultivar]
           gi|3551958|gb|AAC34857; strong similarity to
           early-responsive to dehydration stress ERD7 protein
           [Arabidopsis thaliana] gi|15320412|dbj|BAB63916;
           identical to cDNA ERD7 partial cds GI:15320411
          Length = 452

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 672 EGESERTEGGG-KLDTRWILFKLRKAVNVEVARAPTCI 562
           E  +E  +  G  L T W+ FK+RKA+N +    P+ +
Sbjct: 401 EATNEGLDAAGYALGTAWVAFKIRKAINPKSVLKPSTL 438


>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1081

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 426 RRYPNNSPDDSPGRSEGK 373
           R   N S DDSPG+SEGK
Sbjct: 937 RTTKNQSGDDSPGKSEGK 954


>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1078

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 426 RRYPNNSPDDSPGRSEGK 373
           R   N S DDSPG+SEGK
Sbjct: 934 RTTKNQSGDDSPGKSEGK 951


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,906
Number of Sequences: 28952
Number of extensions: 257031
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)