Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120365.Seq
         (836 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5; Nucleopoly...   173   6e-42
UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8; N...   100   5e-20
UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17; Eukaryo...    35   2.2  
UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1; ...    35   2.9  
UniRef50_P36661 Cluster: Uncharacterized protein yccE; n=10; Ent...    34   5.1  
UniRef50_Q4QJJ0 Cluster: Protein kinase, putative; n=3; Leishman...    33   6.7  

>UniRef50_P12828 Cluster: Early 40.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 40.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 353

 Score =  173 bits (420), Expect = 6e-42
 Identities = 76/84 (90%), Positives = 82/84 (97%)
 Frame = +1

Query: 256 KSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNG 435
           +SALKCIDFDYYG C+K MFCNLQTNLQKCVDQHYAELDVLTRQ+YMS+PLV+LKCYQNG
Sbjct: 69  RSALKCIDFDYYGFCAK-MFCNLQTNLQKCVDQHYAELDVLTRQVYMSDPLVVLKCYQNG 127

Query: 436 AYRLNGQIDLHLNRHIKCIKTQYN 507
           AYRLNGQI+LHLNRHIKCIKTQYN
Sbjct: 128 AYRLNGQINLHLNRHIKCIKTQYN 151



 Score =  169 bits (410), Expect = 1e-40
 Identities = 83/93 (89%), Positives = 83/93 (89%)
 Frame = +3

Query: 483 KMHKNTVQREFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLSFNVFFVNVRIMKRPFN 662
           K  K     EFDLVRFALQIDITSA GVDEYTDN VKITTAPLSFNVFFVNVRIMKRPFN
Sbjct: 144 KCIKTQYNDEFDLVRFALQIDITSADGVDEYTDNGVKITTAPLSFNVFFVNVRIMKRPFN 203

Query: 663 ADRCIKNFSLLGNEYHVLVSSLQRVLNDQLMCL 761
           ADRCIKNFSL GNEYHVLVSSLQRVLNDQLMCL
Sbjct: 204 ADRCIKNFSLFGNEYHVLVSSLQRVLNDQLMCL 236



 Score =  146 bits (353), Expect = 8e-34
 Identities = 69/70 (98%), Positives = 69/70 (98%)
 Frame = +2

Query: 47  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 226
           MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA
Sbjct: 1   MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 60

Query: 227 VTCHIDDDDS 256
           VTCHIDDD S
Sbjct: 61  VTCHIDDDRS 70



 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 758 LAKDIFTNKFDYKIKRRLNHLKRLFA 835
           L KDIFTNKFDYKI+RRL HLKRLFA
Sbjct: 236 LLKDIFTNKFDYKIERRLKHLKRLFA 261


>UniRef50_O10278 Cluster: Putative early 40.3 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 40.3 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 355

 Score =  100 bits (239), Expect = 5e-20
 Identities = 45/98 (45%), Positives = 64/98 (65%)
 Frame = +3

Query: 468 LKPPYKMHKNTVQREFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLSFNVFFVNVRIM 647
           L P  +  + +   EFDL+RFALQ+++ +  GVDEY D  V +      FNVFFVN+R M
Sbjct: 141 LVPCVETVRTSFNGEFDLLRFALQVELKALNGVDEYVDQKVIVDRGAAVFNVFFVNIRAM 200

Query: 648 KRPFNADRCIKNFSLLGNEYHVLVSSLQRVLNDQLMCL 761
           K P   +RC++  ++ G+ Y V+VS LQ V+NDQ+MCL
Sbjct: 201 KGPLTMERCVRTLAVFGDAYRVVVSPLQSVINDQIMCL 238



 Score = 93.1 bits (221), Expect = 8e-18
 Identities = 42/68 (61%), Positives = 51/68 (75%)
 Frame = +2

Query: 47  MERLLNQLNLGVLPYITTKDIEDRLRDKIVAKAKLAFIKDCFEAVVCENGGLFVLTGGAA 226
           M+R+ +Q+  G LPYITT D+EDRLR++I AKA   F K CFEAVV +  GLFVL+GGAA
Sbjct: 1   MDRVASQIYSGALPYITTMDMEDRLRNRIAAKAGAKFFKACFEAVVADKSGLFVLSGGAA 60

Query: 227 VTCHIDDD 250
             CHI DD
Sbjct: 61  TACHIGDD 68



 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 KSALKCIDFDYYGLCSKKM-FCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQN 432
           ++ LKC+DFDYY    + +    LQ  LQ CV  +   L  L + + M + L ++KC+QN
Sbjct: 69  RNVLKCLDFDYYNATQEWLQLARLQQRLQACVQDNLEILSRLAQSVRMQDDLFVVKCFQN 128

Query: 433 GAYRLNGQIDLHLNRHIKCIKTQYN 507
           GA+  NG +   L   ++ ++T +N
Sbjct: 129 GAFCFNGPVQARLVPCVETVRTSFN 153


>UniRef50_Q9ZRJ0 Cluster: Retrotransposon Tto1 DNA; n=17;
            Eukaryota|Rep: Retrotransposon Tto1 DNA - Nicotiana
            tabacum (Common tobacco)
          Length = 1338

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 90   ILRQRILKIACAIKLWLKQSWHLSKIVSKP*FAKTEVYSC*L--EARL*HAISTTTTQKR 263
            IL  RI++   A KLWL Q  ++ K++ +    KT+  SC L    RL    S +T  +R
Sbjct: 1045 ILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDER 1104

Query: 264  IKMHR 278
             KM R
Sbjct: 1105 RKMER 1109


>UniRef50_A0EYZ5 Cluster: Putative uncharacterized protein; n=1;
           Ecotropis obliqua NPV|Rep: Putative uncharacterized
           protein - Ecotropis obliqua NPV
          Length = 393

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 83  LPYITTKDIEDRLRDKIVAKAKLAF---IKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 253
           LPYI+ K + D + + I+++    F   + DC E ++       ++ GGAA+  H+ DD+
Sbjct: 14  LPYISKKAVNDAMCNYILSQMPKMFYSEVYDCVERILHRQK--CIVKGGAAIAAHLQDDN 71


>UniRef50_P36661 Cluster: Uncharacterized protein yccE; n=10;
           Enterobacteriaceae|Rep: Uncharacterized protein yccE -
           Escherichia coli (strain K12)
          Length = 418

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = +3

Query: 492 KNTVQREFDLVRFALQIDITSAYGVDEYTDNCVKITTAPLSFNVFFVNVRIMKRPFNADR 671
           K T++   D   + L+ D+ + +GVD  +DN ++  ++ +S++  F   + +    N ++
Sbjct: 248 KKTIEALVDTAFYNLREDVKTLFGVDLQSDNQIQGQSSLMSWSFLFFKKQFIDSCLNNEK 307

Query: 672 CI 677
           CI
Sbjct: 308 CI 309


>UniRef50_Q4QJJ0 Cluster: Protein kinase, putative; n=3;
           Leishmania|Rep: Protein kinase, putative - Leishmania
           major
          Length = 432

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 550 QAHTASTSIPTTA---LK*PQPRCLSTCF-LSTCAL*NDPSTRTAA 675
           +  TASTS+P T+   L+ P  RC+S  F  +T A  N  ST TAA
Sbjct: 376 EEETASTSVPVTSRSGLRTPNSRCVSVPFGTNTSAFSNSSSTTTAA 421


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,177,472
Number of Sequences: 1657284
Number of extensions: 14332376
Number of successful extensions: 40477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40467
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)