Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120365.Seq
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    30   2.6  
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    28   8.0  
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    28   8.0  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 131 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDDSK 259
           +   A   F+        C  GGL +L G   V C+ID DD +
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDDGR 480


>05_06_0273 -
           26851077-26851167,26851433-26851869,26852125-26852271,
           26852352-26854415,26854792-26854908,26855007-26855093,
           26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 744 RSKRVATTTPTRDIRFQEAKN 682
           R  R+ATT+P   +++QE KN
Sbjct: 718 RPSRLATTSPAEPVKYQETKN 738


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 659 EGSFHNAHVDKKHVERQRGCGYFNAVVGILVDAVCACY 546
           E   H   +DK+HVE     GY    V +L D +   Y
Sbjct: 263 EAPVHRGGLDKEHVEYLNSLGYPKPPVNVLDDGLILAY 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,940,992
Number of Sequences: 37544
Number of extensions: 395105
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)