Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120365.Seq
(836 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.66
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10) 30 2.7
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8) 29 4.7
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7) 29 4.7
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.2
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2) 28 8.2
SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019) 28 8.2
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37) 28 8.2
SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4) 28 8.2
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 31.9 bits (69), Expect = 0.66
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 415 LKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNVSLI 519
L+ NG R +G++ LH+ +KC K QYN S++
Sbjct: 545 LQAKDNGRERKHGEMTLHVT--VKCAKYQYNFSIV 577
>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
Length = 218
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -3
Query: 297 KAVIIKIYAF*CAFESSSSIW---HVTAAPPVNTNKPPFSQTTASKQSLINANFALATIL 127
K V YA A S +S+ H+ A P NKP S T ++ N +L
Sbjct: 118 KRVTFSKYALLLAAASENSLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLL 177
Query: 126 SRKRSSISFVVI*GRTPRFS*FNK 55
+ + ++F GRTP +NK
Sbjct: 178 LTRGADVNFADKQGRTPMLLAWNK 201
>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
Length = 182
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 406 LVMLKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNVSLIWLDLHY 537
LVM QN + ++ H N+H CIK Q ++L W DL++
Sbjct: 115 LVMFNTRQNSS--CPPLVNRHYNQHEFCIKIQVRITLYW-DLNF 155
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 648 KRPFNADRCIKNFSLLGNE-YHVLVSSLQRVLN 743
+RPF DRC K F G+ H+ SS R LN
Sbjct: 563 ERPFECDRCDKRFGRSGDRARHIRKSSRIRTLN 595
>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
Length = 412
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 239 IDDDDSKAH*NA*ILIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 397
+ D++ + +A L + AFA KKC T + KNA + W C R C
Sbjct: 350 VGDEELEDFDDAARLSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401
>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 241 RRRRLKSALKCIDFDYYGLCSKKM 312
R R +K K I D YG+C+KKM
Sbjct: 244 RERFIKQLSKYIPVDVYGICAKKM 267
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 579 DNCVKITTAPLSFNVFFVNVRIMKRPFNADRCIKNF 686
+ C K P+S N V ++RP+ D+C K F
Sbjct: 506 NECEKKFKHPVSLNKHVRGVHSLERPYKCDQCDKKF 541
>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
Length = 167
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 574 YSSTPYALVISICSANLTKSNSRCTVFLC 488
+ +T + L IS CS + T SRC ++LC
Sbjct: 83 HCATYHTLPISHCSTSYTLPISRCALYLC 111
>SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)
Length = 233
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 444 TKRSNRFALKPPYKMHKNTVQREFD 518
T+RS R A PPYK K T+ +D
Sbjct: 187 TERSERRARAPPYKQQKRTMWGSYD 211
>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
Length = 646
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 599 HSPAVFQRVFCQRAHYETTLQRGPLHQKF 685
HSP + +++ HY +QR P H+ F
Sbjct: 505 HSPRIPPKIYAGFVHYRAFIQRDPSHRWF 533
>SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)
Length = 187
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 444 TKRSNRFALKPPYKMHKNTVQREFD 518
T+RS R A PPYK K T+ +D
Sbjct: 141 TERSERRARPPPYKQQKRTMWGSYD 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,035,814
Number of Sequences: 59808
Number of extensions: 488897
Number of successful extensions: 1329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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