Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120365.Seq
         (836 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X95191-1|CAA64490.1|  290|Homo sapiens delta-sarcoglycan protein.      31   6.8  
BX537948-1|CAD97916.1|  289|Homo sapiens hypothetical protein pr...    31   6.8  
BC020740-1|AAH20740.1|  290|Homo sapiens sarcoglycan, delta (35k...    31   6.8  
BC104037-1|AAI04038.1|  552|Homo sapiens LRIT3 protein protein.        30   9.0  
AK126648-1|BAC86628.1|  496|Homo sapiens protein ( Homo sapiens ...    30   9.0  

>X95191-1|CAA64490.1|  290|Homo sapiens delta-sarcoglycan protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 FEAVVCENGGLFVLTGGAAVTCHID 244
           FE  VC NG LF+   GA  TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285


>BX537948-1|CAD97916.1|  289|Homo sapiens hypothetical protein
           protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 FEAVVCENGGLFVLTGGAAVTCHID 244
           FE  VC NG LF+   GA  TC I+
Sbjct: 260 FEICVCANGRLFLSQAGAGSTCQIN 284


>BC020740-1|AAH20740.1|  290|Homo sapiens sarcoglycan, delta (35kDa
           dystrophin-associated glycoprotein) protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 FEAVVCENGGLFVLTGGAAVTCHID 244
           FE  VC NG LF+   GA  TC I+
Sbjct: 261 FEICVCANGRLFLSQAGAGSTCQIN 285


>BC104037-1|AAI04038.1|  552|Homo sapiens LRIT3 protein protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 276 YAF*CAFESSSSIWHVTAAPP--VNTNKPPFSQTTASKQSLINANFALATILSRKRS 112
           Y +  +F  +SS    T +PP   + +  PFS +T S  + ++ + + +T ++ KRS
Sbjct: 258 YLWSSSFSPTSSFSASTLSPPSTASFSLSPFSSSTVSSTTTLSTSISASTTMANKRS 314


>AK126648-1|BAC86628.1|  496|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44691 fis, clone BRACE3013874. ).
          Length = 496

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 276 YAF*CAFESSSSIWHVTAAPP--VNTNKPPFSQTTASKQSLINANFALATILSRKRS 112
           Y +  +F  +SS    T +PP   + +  PFS +T S  + ++ + + +T ++ KRS
Sbjct: 202 YLWSSSFSPTSSFSASTLSPPSTASFSLSPFSSSTVSSTTTLSTSISASTTMANKRS 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,490,885
Number of Sequences: 237096
Number of extensions: 2079102
Number of successful extensions: 4990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4990
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)