Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120365.Seq
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   2.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   2.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   8.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   8.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   8.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 725 VATRFERPVNVLAKDIFTNKFDYKIKRRL 811
           + T+F    ++LA+DI    FD++ K  L
Sbjct: 375 INTKFYGMYDILARDILGYNFDFQNKNNL 403


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 725 VATRFERPVNVLAKDIFTNKFDYKIKRRL 811
           + T+F    ++LA+DI    FD++ K  L
Sbjct: 375 INTKFYGMYDILARDILGYNFDFQNKNNL 403


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 281 KSMHFNALLSRRRR 240
           K  HFN  L+RRRR
Sbjct: 25  KEFHFNRYLTRRRR 38


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 669 RCIKNFSLLGNEYHVLVSSLQRVLNDQLMCLRRTFSPTSLI 791
           RC+K   L    YHVL  + + + + +L+ +R      S I
Sbjct: 610 RCVKGILLKSGLYHVLRGN-ENIYSGKLISMRHLKEEVSSI 649


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 25  KEFHYNRYLTRRRR 38


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 287 KEFHYNRYLTRRRR 300


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 281 KSMHFNALLSRRRR 240
           K  H+N  L+RRRR
Sbjct: 25  KEFHYNHYLTRRRR 38


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 233 CHIDDDDSKAH*NA*ILIITAFAQKKCFATC 325
           C I    ++   NA +L ITAF  ++  A C
Sbjct: 127 CIIQSFAAETSANATVLTITAFTVERYIAIC 157


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 164 DCFEAVVCENGGLFVLTGGAAV 229
           DC +A+   N  L V++GG+ +
Sbjct: 425 DCLKAIKENNADLTVVSGGSVL 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,094
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)