Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120364.Seq
         (804 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   2.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.8  
DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor...    23   8.3  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   8.3  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 305  NHSSPMSKSHIIIAFKTQEMVPSPTPFWPCSSSSKRRKFRGTTTPDDGFAMITVSPA*RT 126
            NHS P +    ++A+  + ++    P W  + +++ R+ R         A I V+ A RT
Sbjct: 827  NHSGPRTAKSRLLAYVAESVLRYAAPVW--AEATQVRECRRMLQRVQRKAAIRVARAFRT 884

Query: 125  VK 120
            V+
Sbjct: 885  VR 886


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = -2

Query: 308 NNHSSPMSKSHIIIAFKTQEMVPSPTPFWPCSSSSKRRKFRGTTTPDDGFAMITVSPA*R 129
           N+H+SPMS  +  +       VP+P      +++S      G   P+  F     +    
Sbjct: 460 NHHNSPMSPINFNLLSAASTAVPNPAA-TNATANSTTTGAGGLLDPNSNFHKSLAAANTN 518

Query: 128 TVKT*INSVKLYCIGAT 78
             KT   ++ L   GAT
Sbjct: 519 DSKTGTGNLLLKTAGAT 535


>DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor 22
           protein.
          Length = 467

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 719 IKAIIDLQYMHQHDSFSNIENNLFIL 642
           +K   D+  + QHDSF +   +L +L
Sbjct: 54  LKIASDVNLLDQHDSFYHTTKSLLVL 79


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 497 HQNSLQEVRRLMTLKDNMKLSQPPEGSTF*FLQSSLNRPNLLSHKTII 640
           H N  + +  + T    M  SQP  G T  ++Q    R    ++ TII
Sbjct: 174 HSNRAEFLIAIFTTVQPMHASQPLRGETGNWVQHRAQRNRTNNNNTII 221


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,573
Number of Sequences: 2352
Number of extensions: 17715
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 84823812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)