Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120364.Seq
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.82 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 423 CVNSQTGL-VDNRQVPILARWQRDYT 497
           C  S+T L   NR++P  A W++D T
Sbjct: 378 CFKSRTNLDPSNRKLPAPANWKKDTT 403


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 312 PPRTPYENRMYSLK---IECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILAR 479
           PP+ P   ++ S     IE GT  PD+P ++   S     C + ++   +   +P+L R
Sbjct: 565 PPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKR 623


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 234 GRWNHFLGLESDDDMTLTHWTGM 302
           G +  FLG+ S DD  +   TG+
Sbjct: 2   GTFLRFLGISSSDDNRIDQATGL 24


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 234 GRWNHFLGLESDDDMTLTHWTGM 302
           G +  FLG+ S DD  +   TG+
Sbjct: 2   GTFLRFLGISSSDDNRIDQATGL 24


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 186 WHHNA**RIRHDHSITGLENCKNLD*FSQALLHRRYL 76
           W ++A     ++   + L NCKN D  +  L  +RYL
Sbjct: 15  WQNSASLENDNEFGFSYLLNCKNYDHPTTLLKLKRYL 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,539
Number of Sequences: 438
Number of extensions: 5006
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)