Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120360.Seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    32   0.50 
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   30   2.0  
SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)                29   3.5  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 29   3.5  
SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)            28   6.1  
SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)             28   6.1  
SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)               28   6.1  

>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 415 LKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNVSLI 519
           L+   NG  R +G++ LH+   +KC K QYN S++
Sbjct: 545 LQAKDNGRERKHGEMTLHVT--VKCAKYQYNFSIV 577


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
 Frame = -2

Query: 297 KAVIIKIYAF*CAFESSSSIW---HVTAAPPVNTNKPPFSQTTASKQSLINANFALATIL 127
           K V    YA   A  S +S+    H+  A P   NKP  S  T   ++    N     +L
Sbjct: 118 KRVTFSKYALLLAAASENSLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLL 177

Query: 126 SRKRSSISFVVI*GRTPRFS*FNK 55
             + + ++F    GRTP    +NK
Sbjct: 178 LTRGADVNFADKQGRTPMLLAWNK 201


>SB_49053| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=8)
          Length = 182

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 406 LVMLKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNVSLIWLDLHY 537
           LVM    QN +      ++ H N+H  CIK Q  ++L W DL++
Sbjct: 115 LVMFNTRQNSS--CPPLVNRHYNQHEFCIKIQVRITLYW-DLNF 155


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 239 IDDDDSKAH*NA*ILIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 397
           + D++ +   +A  L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 350 VGDEELEDFDDAARLSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


>SB_3748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 241 RRRRLKSALKCIDFDYYGLCSKKM 312
           R R +K   K I  D YG+C+KKM
Sbjct: 244 RERFIKQLSKYIPVDVYGICAKKM 267


>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
          Length = 167

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 574 YSSTPYALVISICSANLTKSNSRCTVFLC 488
           + +T + L IS CS + T   SRC ++LC
Sbjct: 83  HCATYHTLPISHCSTSYTLPISRCALYLC 111


>SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 444 TKRSNRFALKPPYKMHKNTVQREFD 518
           T+RS R A  PPYK  K T+   +D
Sbjct: 187 TERSERRARAPPYKQQKRTMWGSYD 211


>SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)
          Length = 187

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 444 TKRSNRFALKPPYKMHKNTVQREFD 518
           T+RS R A  PPYK  K T+   +D
Sbjct: 141 TERSERRARPPPYKQQKRTMWGSYD 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,674,507
Number of Sequences: 59808
Number of extensions: 381353
Number of successful extensions: 1017
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)