Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120360.Seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr... 29 3.1
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 3.1
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78063-4|CAB01505.1| 685|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50829-1|AAC47113.1| 685|Caenorhabditis elegans SEL-1 protein. 28 5.4
AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine r... 28 5.4
AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 231 VTAAPPVNTNKPPFSQTTASKQSLINANFA 142
+ +PP NT KPP TTA++ + + A A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141
>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
F29D11.2 protein.
Length = 1153
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 231 VTAAPPVNTNKPPFSQTTASKQSLINANFA 142
+ +PP NT KPP TTA++ + + A A
Sbjct: 1112 ILKSPPRNTKKPPSRPTTATRPTAVAARTA 1141
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 259 SALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMS------NPLVMLK 420
+A + + + GLC +K F LQT+L++ Y E+ T I +S N LV++
Sbjct: 17 NASNYLTYPFDGLCLQKFFYQLQTSLRRFTP--YEEIIYTTVYIIISVAAVIGNGLVIMA 74
Query: 421 CYQNGAYRLNGQIDLHLNRHI-KCIKTQYNVSLIWL 525
+ R N + L LN + I N+ +WL
Sbjct: 75 VVRKKTMRTNRNV-LILNLALSNLILAITNIPFLWL 109
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +1
Query: 259 SALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMS------NPLVMLK 420
+A + + + GLC +K F LQT+L++ Y E+ T I +S N LV++
Sbjct: 37 NASNYLTYPFDGLCLQKFFYQLQTSLRRFTP--YEEIIYTTVYIIISVAAVIGNGLVIMA 94
Query: 421 CYQNGAYRLNGQIDLHLNRHI-KCIKTQYNVSLIWL 525
+ R N + L LN + I N+ +WL
Sbjct: 95 VVRKKTMRTNRNV-LILNLALSNLILAITNIPFLWL 129
>Z78063-4|CAB01505.1| 685|Caenorhabditis elegans Hypothetical
protein F45D3.5 protein.
Length = 685
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 208 VNWRRGCDMPYRRRRLKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 357
+NW+R + Y R+K D+ YYGL ++ +N + VD+H
Sbjct: 539 LNWQRSANQEYAAARVKLG----DYYYYGLGTEVDHSLAFSNYKMAVDRH 584
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +1
Query: 256 KSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVMLKCYQNG 435
K L + D C++K F + L Y +V + QI + +V KCYQ+
Sbjct: 110 KFNLNQVFMDGVEFCTRKEFKKFERALLAGTAASYLSREVKS-QIELLKVMVHEKCYQST 168
Query: 436 AYRLNGQIDLHLNRHIKCIKTQYNVSL 516
+Y + + D + + +K +VSL
Sbjct: 169 SYHITHRTDEPMQKIPLKMKPNSSVSL 195
>U50829-1|AAC47113.1| 685|Caenorhabditis elegans SEL-1 protein.
Length = 685
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 208 VNWRRGCDMPYRRRRLKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 357
+NW+R + Y R+K D+ YYGL ++ +N + VD+H
Sbjct: 539 LNWQRSANQEYAAARVKLG----DYYYYGLGTEVDHSLAFSNYKMAVDRH 584
>AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein49 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 552 SAYGVDEYTDNCVKITTAPLFFQRVFCQRAHYETTLQ 662
SA V + D I P+F RVFC R + T+ Q
Sbjct: 285 SALAVFSFVDPVAIILCVPIFRARVFCNRKNMPTSKQ 321
>AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical
protein C24G6.3 protein.
Length = 922
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 567 DEYTDNCVKITTAPLFFQRVFCQ 635
D D C T +PL+ QR+FCQ
Sbjct: 739 DSNPDRCRYETASPLWRQRIFCQ 761
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,763
Number of Sequences: 27780
Number of extensions: 299306
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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