Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120360.Seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At5g67310.1 68418.m08488 cytochrome P450 family protein                27   8.8  
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general...    27   8.8  
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi...    27   8.8  
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica...    27   8.8  

>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 617 KEQRGCGYFN--AVVGILVDAVCACYINL*CKSNQIK 513
           K  R C   +  A +G+++DA C   IN  CK+ +IK
Sbjct: 553 KVARACKILDELAPMGVILDAACEDMINTLCKAGRIK 589


>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 265 LKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 357
           LK  D D Y   +KK+   L   +QK VD+H
Sbjct: 238 LKLFDLDGYRKRAKKLASKLDKFMQKLVDEH 268


>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general
           regulatory factor 1 (GRF1) identical to 14-3-3 protein
           GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
           thaliana]
          Length = 267

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 250 RLKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVM 414
           RL  AL    F Y  L S    CNL    ++  D+  AELD L  + Y  + L+M
Sbjct: 178 RLGLALNFSVFYYEILNSPDRACNLA---KQAFDEAIAELDTLGEESYKDSTLIM 229


>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
           to GF14omega isoform GI:487791 from [Arabidopsis
           thaliana]
          Length = 259

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 250 RLKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVM 414
           RL  AL    F Y  L S    CNL    ++  D+  AELD L  + Y  + L+M
Sbjct: 173 RLGLALNFSVFYYEILNSPDRACNLA---KQAFDEAIAELDTLGEESYKDSTLIM 224


>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
           to GF14 protein phi chain GI:1493805, SP:P46077 from
           [Arabidopsis thaliana]
          Length = 267

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 250 RLKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQHYAELDVLTRQIYMSNPLVM 414
           RL  AL    F Y  L S    CNL    ++  D+  AELD L  + Y  + L+M
Sbjct: 179 RLGLALNFSVFYYEILNSPDRACNLA---KQAFDEAIAELDTLGEESYKDSTLIM 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,994
Number of Sequences: 28952
Number of extensions: 258319
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)