Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120359.Seq
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.52 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.8  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   8.4  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 SRLAQFADRNKHDGQRYVFIWP 309
           +RL  F+DR K  G R   IWP
Sbjct: 551 TRLVSFSDRLKSRGIRTAAIWP 572


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 560 FEKQMTSFLKFSFEKQMNHLLIVFYT 483
           F      F K S +   +H LIVF+T
Sbjct: 148 FRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 560 FEKQMTSFLKFSFEKQMNHLLIVFYT 483
           F      F K S +   +H LIVF+T
Sbjct: 148 FRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 560 FEKQMTSFLKFSFEKQMNHLLIVFYT 483
           F      F K S +   +H LIVF+T
Sbjct: 148 FRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 560 FEKQMTSFLKFSFEKQMNHLLIVFYT 483
           F      F K S +   +H LIVF+T
Sbjct: 148 FRSSRMCFFKSSKKPAFSHFLIVFFT 173


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 222 HA*FQHRERRGPHWW 178
           H  FQH     P+WW
Sbjct: 82  HKVFQHLMIHRPNWW 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,894
Number of Sequences: 336
Number of extensions: 4086
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)