Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120359.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    83   6e-17
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   3.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.0  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    26   5.3  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   7.0  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +3

Query: 6   IISGD--VHGKIYFQQESANRPLKISGYLL-NLPRGLHGFHVHEYGDTSNGCTSAGEHFN 176
           ++ GD  V G + F+Q   N  + +   L+ N      GFH+H++GD +NGCTSAG HFN
Sbjct: 7   VLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFN 66

Query: 177 PTNEDHGAPDAEIRHVGDLGNIKS 248
           P  + HG   A +RHVGDLGN++S
Sbjct: 67  PEGKTHGDRTAAVRHVGDLGNLES 90



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +2

Query: 284 DNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 436
           D+V+SL+G ++IIGR++V+H  +DDLG      S  TGN+  R  CG+I I
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
 Frame = -1

Query: 427 YSASQTAVRIAGCFAQ-RMLGKAQIVFVRV----HDQTSSYNIMRAI*RHNVVHHVYFGQ 263
           YS+S TA +I  C +    L  +    ++V     ++ +S NI  A+    +   V   Q
Sbjct: 69  YSSSNTARKIFICTSSVSNLASSIPALIKVVTPTKEEDASLNINLAVSSLILGSKVLIHQ 128

Query: 262 RIVPTDFMLPKSPTCLISASGAPWSS--LVGLKCSPADVQPLL 140
            ++P+ F +  S   L SAS  P SS  LV L+ +  D   ++
Sbjct: 129 NLIPSLFSVSNSTKLLYSASLLPRSSERLVTLETNEIDASVVI 171


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 475  LLVKRVKAMTSFTYGNYSASQTAV-RIAGCFAQRMLGKAQIVF 350
            L+++RV +++   YGN   +QTA+  +A   + ++L +  +++
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTAIDYLAQASSSKVLAQMDVLW 3695


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
 Frame = +3

Query: 6   IISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSA------GE 167
           +I  D +G+I     S    LK +G + + P   HGF +  + + S+  T A      GE
Sbjct: 179 VICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSSTCAVATSGTGE 238

Query: 168 HFNPT 182
           H + T
Sbjct: 239 HISNT 243


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -3

Query: 749 QFSFEKQMTSFLKFSFEKQMTSSLDCVL 666
           +F+ EK + +F+K  F+K+ + +  C++
Sbjct: 27  KFTIEKDIAAFIKREFDKKFSPTWHCIV 54


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 712 LRNDVICFSKLNWLYEYILLVKH 780
           + N + CF K  WL   ++LV H
Sbjct: 447 ISNSMDCFEKYGWLKAMLILVTH 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,914
Number of Sequences: 5004
Number of extensions: 68848
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)