Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120359.Seq
(784 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 61 9e-10
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 39 0.004
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5) 32 0.46
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2) 28 9.8
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0) 28 9.8
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 28 9.8
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 90.2 bits (214), Expect = 2e-18
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 60 RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGN 239
+P KI+G + L G HGFH+H YGD +NGC SAG HFNP ++HG P E RHVGDLGN
Sbjct: 26 KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85
Query: 240 I 242
+
Sbjct: 86 V 86
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/55 (54%), Positives = 42/55 (76%)
Frame = +2
Query: 272 INMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 436
I+M D +++L G H+++GRS+VVH D+DDLG H SKTTG++ GRL CG+I I
Sbjct: 96 IDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGI 150
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 61.3 bits (142), Expect = 9e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 314 NIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIA 433
+IIGR++VVH D+DDLG H LSK+TGNS R+GCGIIA
Sbjct: 29 DIIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGIIA 68
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/90 (22%), Positives = 45/90 (50%)
Frame = +1
Query: 514 CFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVI 693
C +K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1145 CSAKVNVSHDMTLVAKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMT 1204
Query: 694 CFSKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1205 LVAKVNVSHDMTLVAKVNVSHDMTLVAKVN 1234
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/88 (22%), Positives = 45/88 (51%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N L++ K D+ +K+N ++ K D+
Sbjct: 1159 AKVNVSHDMTLVAKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1218
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1219 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1246
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/88 (22%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1255 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1314
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N +E L+ K N
Sbjct: 1315 AKVNMSHDMSLVAKVNVSHEMTLVAKVN 1342
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1243 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1302
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1303 AKVNVSHDMTLVAKVNMSHDMSLVAKVN 1330
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1183 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1242
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1243 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1270
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1195 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1254
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1255 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1282
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1207 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1266
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1267 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1294
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1219 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1278
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1279 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1306
Score = 36.7 bits (81), Expect = 0.021
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1231 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1290
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1291 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1318
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/88 (21%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1171 AKVNVLHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLV 1230
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +D+ +K+N ++ L+ K N
Sbjct: 1231 AKVNVSHDMTLVAKVNVSHDMTLVAKVN 1258
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/88 (20%), Positives = 44/88 (50%)
Frame = +1
Query: 520 SKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*NSTCKTQSRDDVICF 699
+K+N+ +D+ +K+N ++ K D+ +K+N ++ K D+
Sbjct: 1267 AKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNMSHDMSLV 1326
Query: 700 SKLNLRNDVICFSKLNWLYEYILLVKHN 783
+K+N+ +++ +K+N ++ L+ K N
Sbjct: 1327 AKVNVSHEMTLVAKVNVSHDMTLVAKVN 1354
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 192 HGAPDAEIRHVGDLGNIKS 248
HGAP+ + RH+GDLGNI++
Sbjct: 2 HGAPEDKDRHLGDLGNIEA 20
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 257 NSLTEINMMDNVMSLYGPHNIIGRSLV 337
N + ++++ D ++SL G +IIGRSLV
Sbjct: 23 NGIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_38449| Best HMM Match : zf-C3HC4 (HMM E-Value=3.5)
Length = 184
Score = 32.3 bits (70), Expect = 0.46
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 511 ICFSKLNLRNDV-ICFSKLNWLYEYNSTCKT*SRDDV---ICFSKLNSLYE*NSTCKTQS 678
IC SK V IC + WLY + C+ SR ++ IC + L+ C+ +
Sbjct: 15 ICQSKGRQNLSVAICQFSVRWLYAFKRVCRFVSRQNLSVAICQCSVRWLFAVKRVCRIRQ 74
Query: 679 RDDVICFSKLNLRNDVICFSKLNWLYEY 762
+ NL + IC S + WLY +
Sbjct: 75 ST-----GRQNL-SVAICQSSVRWLYAF 96
>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +1
Query: 496 IKR*FICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDD-VICFSKLN-SLYE*NSTCK 669
+ R F+CF +NL +CF +N L+ + +T + +CF +N S +
Sbjct: 69 LSRWFMCFQTVNLSRWFMCFQAVN-LFRWFMCFQTVNLSRWFMCFQAVNLSRWFMCFQAV 127
Query: 670 TQSRDDVICFSKLNLRNDVICFSKLN 747
SR ++CF +NL +CF +N
Sbjct: 128 NLSR-WLMCFQAVNLSRWFMCFQTVN 152
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 496 IKR*FICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDD-VICFSKLN-SLYE*NSTCK 669
+ R F+CF +NL ++CF +N L + +T + ICF +N S +
Sbjct: 117 LSRWFMCFQAVNLSRWLMCFQAVN-LSRWFMCFQTVNLSRWFICFQDVNLSRWFMCFQAV 175
Query: 670 TQSRDDVICFSKLNLRNDVICFSKLN 747
SR +CF +NL +CF +N
Sbjct: 176 NLSRWS-MCFQTVNLSRWFMCFQAVN 200
Score = 28.7 bits (61), Expect = 5.6
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +1
Query: 496 IKR*FICFSKLNLRNDVICFSKLN---WLYEYNSTCKT*SRDDVICFSKLN-SLYE*NST 663
+ R F+CF +NL ICF +N W + + SR +CF +N S +
Sbjct: 141 LSRWFMCFQTVNLSRWFICFQDVNLSRWFMCFQAV--NLSRWS-MCFQTVNLSRWFMCFQ 197
Query: 664 CKTQSRDDVICFSKLNLRNDVICFSKLN 747
SR +CF +NL ++CF +N
Sbjct: 198 AVNLSR-WFMCFQAVNLSRWLMCFQAVN 224
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 496 IKR*FICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLN-SLYE*NSTCKT 672
+ R F+CF +NL ++CF +N + ICF +N S +
Sbjct: 321 LSRWFMCFQAVNLSRWLMCFQAVNLSRWFMCFHPVNLSRWFICFQDVNLSRWFMCFQAVN 380
Query: 673 QSRDDVICFSKLNLRNDVICFSKLN 747
SR +CF +NL +CF +N
Sbjct: 381 LSR-WFMCFQAVNLSRWFMCFHAVN 404
>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 120 VHEYGDTSNGCTSAGEHFNPTNED-HGA----PDAEIRHVGDLGNIKSVGT 257
++ Y T TS N T E+ +G PD E++ V D+GNI ++GT
Sbjct: 326 IYLYASTETFMTSIQIVTNQTREEQYGVMSIVPDVEVKVVDDVGNIVAMGT 376
>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
Length = 375
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 243 LCCPSRQHA*FQHRERRGPHWWD 175
L CPSR HA R RR +WD
Sbjct: 104 LRCPSRSHAMRSMRTRRRARYWD 126
>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
Length = 869
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 251 WHNSLTEINMMDNVMSLYGPHNII-GRSLVVHTDKDDLGLTE-HPLSKTT 394
+HN+LT + M +G HN++ S V+ D L +TE HP T
Sbjct: 135 YHNNLTGTLHLLECMKKHGVHNLVFSSSATVYGDPQFLPITESHPAGGCT 184
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Frame = +3
Query: 108 HGFHVHE--YGD-----TSNG-CTSAGEHFNPTNED 191
H +HVHE GD +G C+S G H+NP N D
Sbjct: 387 HNWHVHEKPVGDDMTKPVDDGRCSSLGPHYNPYNVD 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,803,522
Number of Sequences: 59808
Number of extensions: 537205
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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