Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120359.Seq
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 101 6e-22
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 101 6e-22
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 101 6e-22
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 101 6e-22
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 94 1e-19
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 90 2e-18
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 90 2e-18
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 90 2e-18
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 28 8.7
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 28 8.7
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 28 8.7
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 101 bits (242), Expect = 6e-22
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 182
++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP
Sbjct: 8 VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67
Query: 183 NEDHGAPDAEIRHVGDLGNIKS 248
+ HG P +EIRHVGDLGN+++
Sbjct: 68 GKTHGGPKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LGQHKVGWHNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 400
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 401 SDGRLGCGIIAI 436
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 101 bits (242), Expect = 6e-22
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 182
++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP
Sbjct: 8 VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67
Query: 183 NEDHGAPDAEIRHVGDLGNIKS 248
+ HG P +EIRHVGDLGN+++
Sbjct: 68 GKTHGGPKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LGQHKVGWHNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 400
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 401 SDGRLGCGIIAI 436
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 101 bits (242), Expect = 6e-22
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 182
++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP
Sbjct: 8 VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 67
Query: 183 NEDHGAPDAEIRHVGDLGNIKS 248
+ HG P +EIRHVGDLGN+++
Sbjct: 68 GKTHGGPKSEIRHVGDLGNVEA 89
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LGQHKVGWHNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 400
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 84 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 142
Query: 401 SDGRLGCGIIAI 436
+ R CG+IA+
Sbjct: 143 AGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 101 bits (242), Expect = 6e-22
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 IISGD-VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPT 182
++ G+ V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP
Sbjct: 30 VLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPF 89
Query: 183 NEDHGAPDAEIRHVGDLGNIKS 248
+ HG P +EIRHVGDLGN+++
Sbjct: 90 GKTHGGPKSEIRHVGDLGNVEA 111
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LGQHKVGWHNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 400
LG + G + + +I + D +++LYGP+ ++GRS+VVH +DDLG + SK TGN
Sbjct: 106 LGNVEAG-ADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGN 164
Query: 401 SDGRLGCGIIAI 436
+ R CG+IA+
Sbjct: 165 AGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 93.9 bits (223), Expect = 1e-19
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +3
Query: 21 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 200
V G ++ Q++ + G + L GLHGFH+H+YGD+++GCTSAG HFNP +HG
Sbjct: 34 VFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGG 93
Query: 201 PDAEIRHVGDLGNIKS 248
D+ +RHVGDLGN+++
Sbjct: 94 RDSVVRHVGDLGNVEA 109
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LGQHKVGWHNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGL---TEHPLSKTTGN 400
LG + G + + +I D V+SL+G + +IGRS+VVH D+DDLG + S TGN
Sbjct: 104 LGNVEAG-ADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGN 162
Query: 401 SDGRLGCGIIAI 436
+ R CG+IA+
Sbjct: 163 AGARAACGVIAL 174
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/80 (52%), Positives = 52/80 (65%)
Frame = +3
Query: 9 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 188
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 189 DHGAPDAEIRHVGDLGNIKS 248
HGAPD RH+GDLGNI+S
Sbjct: 94 SHGAPDDSNRHIGDLGNIES 113
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +2
Query: 266 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 430
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/80 (52%), Positives = 52/80 (65%)
Frame = +3
Query: 9 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 188
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 189 DHGAPDAEIRHVGDLGNIKS 248
HGAPD RH+GDLGNI+S
Sbjct: 94 SHGAPDDSNRHIGDLGNIES 113
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = +2
Query: 266 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 436
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGI 175
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/80 (52%), Positives = 52/80 (65%)
Frame = +3
Query: 9 ISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 188
I ++ G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP
Sbjct: 36 IPTELIGTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 189 DHGAPDAEIRHVGDLGNIKS 248
HGAPD RH+GDLGNI+S
Sbjct: 94 SHGAPDDSNRHIGDLGNIES 113
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/55 (50%), Positives = 37/55 (67%)
Frame = +2
Query: 266 TEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLTEHPLSKTTGNSDGRLGCGII 430
T I++ D++ SL G ++IIGRS+V+H DDLG SKTTGN+ RL CG I
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 27 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 176
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 897 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 27 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 176
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 688 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>Z81110-3|CAB03257.1| 323|Caenorhabditis elegans Hypothetical
protein T01D3.4 protein.
Length = 323
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 616 VICFSKL--NSLYE*NSTCKTQSRDD--VICFSKLNLRNDVICFSKLNWLYEYILL 771
+ICF L N L C Q ++ V+C SK ++ N +IC L W+ ILL
Sbjct: 21 LICFIGLFLNGLIFFKFACPKQLKNGFHVLCLSK-SISNSIICIISLFWVGPAILL 75
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 257 NSLTEINMMDNVMSLYGPHNIIGR 328
N L++ N+ N++S+YG N IGR
Sbjct: 378 NILSDNNVSGNILSVYGTANTIGR 401
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 508 FICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*N 657
F+ F KL+ C K W EY +TCK D++ L ++E N
Sbjct: 147 FMTFDKLSS-----CQKKYFWRCEYKNTCKARMHTDIVTEKILTFIHEHN 191
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 508 FICFSKLNLRNDVICFSKLNWLYEYNSTCKT*SRDDVICFSKLNSLYE*N 657
F+ F KL+ C K W EY +TCK D++ L ++E N
Sbjct: 147 FMTFDKLSS-----CQKKYFWRCEYKNTCKARMHTDIVTEKILTFIHEHN 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,073
Number of Sequences: 27780
Number of extensions: 392515
Number of successful extensions: 899
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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