Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120358.Seq
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004     31   1.4  
12_01_0610 + 5030130-5030247,5030957-5033193                           28   9.8  

>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
          Length = 591

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -3

Query: 279 VTPVRVTPLSPNTRMNIKGSSSI*KPQDVQRHLLSDSGTTHTRIMWNILDNSKDVVSSIN 100
           V P  +    P++ +   G      P+D+   L  D+     R  W  L    ++ S ++
Sbjct: 117 VIPDEILGADPSSTLQAPGPGGGAIPEDLLAALHLDASNPVVRAAWGALSRLDELTSGLS 176

Query: 99  ALQRWHAVS 73
             QRW A +
Sbjct: 177 GPQRWAAAA 185


>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 379 DPYIHAVLNTLLPVLPHTLEKNIDPNSS 296
           D ++ +  NT LP LPH L   + PN S
Sbjct: 380 DSFLLSQANTRLPSLPHLLSSLLKPNPS 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,494,256
Number of Sequences: 37544
Number of extensions: 309828
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)