Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120358.Seq
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_34730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_31533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_26661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_47078| Best HMM Match : PAN (HMM E-Value=0.00042)                   28   10.0 
SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)       28   10.0 

>SB_14680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 703 LFNTLPQSL*KNILTKNFFNYFNGIDLIEVQIKTSTDADTK*NGPIITNMSRIKRNV 533
           LF TLP    +N+   N+   F   ++  +  KTS+D   + N  +I  + ++  +V
Sbjct: 136 LFRTLPSESARNLARVNWIEQFGWKNIALLYEKTSSDLAGQSNNQVIEELKKLNCSV 192


>SB_34730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 156 YVWFRYLIIDGVVRLEVSR 212
           YVW+R L+ID V++  +SR
Sbjct: 15  YVWYRLLLIDDVIQCALSR 33


>SB_38882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 267 RVTPLSPNTRMNIKGSSSI*KPQDVQRHLLSD 172
           R+TPL+   ++  KG  S    QD  R+L SD
Sbjct: 32  RITPLNKTLKIPHKGERSANTAQDTNRYLYSD 63


>SB_31533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -3

Query: 228 KGSSSI*KPQDVQRHLLSDSGTTHTRIMWNILDNSKDVVSSINALQRWHAVSQ*SELLEA 49
           KG S +  PQ   R   SD G +  R +     + K + S + ALQR   + +   ++ A
Sbjct: 45  KGMSMVHAPQ---RTTHSDKGMSMVRALQRTTHSDKGM-SMVLALQRTTHIDKGMSMVHA 100

Query: 48  KQRTDH 31
            QRT H
Sbjct: 101 PQRTTH 106


>SB_26661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 267 RVTPLSPNTRMNIKGSSSI*KPQDVQRHLLSD 172
           R+TPL+   ++  KG  S    QD  R+L SD
Sbjct: 83  RITPLNKTLKIPHKGERSANTAQDTNRYLYSD 114


>SB_47078| Best HMM Match : PAN (HMM E-Value=0.00042)
          Length = 86

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 587 HQIKRTYNYKHVAYKAKCRLNQI 519
           H     YN  H A+ AKC LN +
Sbjct: 45  HSFNYEYNPSHAAFGAKCELNDV 67


>SB_20549| Best HMM Match : Acyltransferase (HMM E-Value=1.8e-27)
          Length = 649

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 267 RVTPLSPNTRMNIKGSSSI*KPQDVQRHLLSD 172
           R+TPL+   ++  KG  S    QD  R+L SD
Sbjct: 480 RITPLNKTLKIPHKGERSANTAQDTNRYLYSD 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,477,410
Number of Sequences: 59808
Number of extensions: 408989
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)