Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120356.Seq
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0928 - 9204979-9205140,9205266-9205324,9205835-9205880           29   3.1  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     29   4.1  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    28   7.2  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    28   9.5  

>12_01_0928 - 9204979-9205140,9205266-9205324,9205835-9205880
          Length = 88

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 500 GRREYILIADRMYVDLIYSEFRAIILPQSAYIIKGDYAESDSESGQSVDVCNELKYPWNL 679
           GRREY+++  R    L  +E     L   AY  +  +  S     +  D CNE+   W L
Sbjct: 7   GRREYLMLQTRHSRTLKINEILLGCLQYKAYKSR-KFGLSSVTLFKKKDYCNEIPNKWPL 65

Query: 680 IT 685
           +T
Sbjct: 66  LT 67


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 410 FRTNWFN*HALVHVVGVENCFSRLGLIVAQQVPIIQFCVLV*KHAV 273
           F TNW    AL  V+ +ENC   + L    Q+P+++  VL   HAV
Sbjct: 788 FETNWMK--ALTSVI-LENCMGWVQLPPLGQLPLLEDLVLRNMHAV 830


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 641 VDVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTF 766
           V++C EL  P+ L+T  SF+    E+         FL YNT+
Sbjct: 586 VELCYELLVPYCLLTNQSFLSKASEN-CFNITLALFLTYNTY 626


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 445 LCSPASSTLLKCSVRIGLINTHSYTSSAL 359
           LC   +ST L C+++   I T S +SS+L
Sbjct: 41  LCGSTNSTSLSCAIQSSNIKTESISSSSL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,859,814
Number of Sequences: 37544
Number of extensions: 343220
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)