Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120356.Seq
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27581| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_51659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   5.5  
SB_18099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_11992| Best HMM Match : GD_AH_N (HMM E-Value=1.1)                   28   9.6  

>SB_27581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 434 WRTQHGRFKDHHRYGHQVHWQTGRREYILIADRMYVDL 547
           +R + GRF    +Y   VH  T  + + LIA ++YV L
Sbjct: 115 FRLRMGRFSPEIKYVQGVHQNTAEQNFSLIAGKIYVCL 152


>SB_51659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 175 WIHPRRANCKVTRPRNNYSDPDNENDICT*PC*TACF*TSTQNCIIGTCCATIKPRREKQ 354
           W   RR NC VTRP  N +       I   P  +  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRYNCAVTRPSTNLALLSLTTVIGREPVLSQWYGRRRQNCVRNRFDITVLTRYYQA 96

Query: 355 FSTPTT 372
            + P+T
Sbjct: 97  VTRPST 102


>SB_33129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = +1

Query: 175 WIHPRRANCKVTRPRNNYSDPDNENDICT*PC*TACF*TSTQNCIIGTCCATIKPRREKQ 354
           W   RR NC VT P  N +     + I   P  +  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRQNCAVTHPSTNRALLSLTSVIGREPVLSQWYGRRRQNCVRNGFDITVLTRYSEA 96

Query: 355 FSTPTTCTSAC*LNQFV 405
            + P T  +   LN  +
Sbjct: 97  VTHPRTYRALLSLNSVI 113


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 112 LCASVKLTPFKPMRPPKPMQCWIHPRRANCKVTRPRNNYSDPDNE-----NDICT*P 267
           +C S   +  +PM P   +  W+  RRA    TRP  NY+ P        N+ CT P
Sbjct: 40  VCHSRHRSTIRPMVPGGLLSMWLLERRAPTHKTRP--NYTSPTTNAARIVNEGCTKP 94


>SB_18099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +1

Query: 175 WIHPRRANCKVTRPRNNYSDPDNENDICT*PC*TACF*TSTQNCIIGTCCATIKPRREKQ 354
           W   RR NC VT P  N +     + I   P  +  +    QNC+      T+  R  + 
Sbjct: 37  WYGRRRQNCAVTHPSTNRALLSLTSVIGREPVLSQWYGRRRQNCVRNRFDITVLTRYSEA 96

Query: 355 FSTPTT 372
            + P+T
Sbjct: 97  VTHPST 102


>SB_11992| Best HMM Match : GD_AH_N (HMM E-Value=1.1)
          Length = 190

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 488 HWQTGRREYILIADRMYVDLIYSEFRAIILPQSAYIIKGDYAESDSESGQSVDVCNELKY 667
           HW    RE I IA     D+ Y E+  ++     Y+    Y E D   G +++   ++ Y
Sbjct: 48  HW----REVIAIALEYLRDISYGEYDIVVAIALEYLSDISYGEYDEVIGIALEYLRDISY 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,824,581
Number of Sequences: 59808
Number of extensions: 431262
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)