Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120355.Seq
         (813 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    30   0.019
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    30   0.019
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 364  YVLYRKLLDLSVLFIISLSFTC-IRFF*IM*M*LGTFWTLILKSPLS*YFYTKPID 200
            Y+ Y +L  +  +F+I  +    I+FF +M    GTF  +I K+ L     +KPID
Sbjct: 1274 YITYLQLEPIGFVFLIFFALLMVIQFFAMMIHRFGTFSQIITKTQLDFDLCSKPID 1329


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 30.3 bits (65), Expect = 0.019
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 364  YVLYRKLLDLSVLFIISLSFTC-IRFF*IM*M*LGTFWTLILKSPLS*YFYTKPID 200
            Y+ Y +L  +  +F+I  +    I+FF +M    GTF  +I K+ L     +KPID
Sbjct: 1274 YITYLQLEPIGFVFLIFFALLMVIQFFAMMIHRFGTFSQIITKTQLDFDLCSKPID 1329


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 433 TYYFFKP**LLLCIIYVH 486
           TYYF+    +LLC+ Y +
Sbjct: 100 TYYFYYAFIILLCVYYFY 117



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 436 YYFFKP**LLLCIIYVH 486
           YYF  P   LLCI Y +
Sbjct: 134 YYFVVPLFFLLCIYYFY 150


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,554
Number of Sequences: 336
Number of extensions: 3925
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)