Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120355.Seq
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8)                 31   0.84 
SB_44580| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_49273| Best HMM Match : Protamine_P2 (HMM E-Value=5.3)              28   7.8  

>SB_27694| Best HMM Match : CPSase_L_D3 (HMM E-Value=8)
          Length = 396

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 134 VTKVLNIIQKKLELGRDPLPHMSMLLSSVWF 42
           V ++ NI    +EL RD  PH+  LL  +WF
Sbjct: 155 VPEISNIPNSHVELVRDQFPHLEGLLEGLWF 185


>SB_44580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 138 ICDESAKYYPKKIRARKGSSAAH 70
           ICD      P  +R+RKGSS+ H
Sbjct: 213 ICDSEHTLSPSSVRSRKGSSSQH 235


>SB_49273| Best HMM Match : Protamine_P2 (HMM E-Value=5.3)
          Length = 190

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 596 HIKHTSILCLIFIIIVNLK*GSIK*CVAFVKQWLFKT 706
           H+K+T + C I++ ++NLK  + K C  +V    FKT
Sbjct: 108 HLKYTRMACRIYVCVLNLK-FTRKACRVYVCGTPFKT 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,418,895
Number of Sequences: 59808
Number of extensions: 371426
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)