Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120355.Seq
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 321 INNTDKSNNFLYKTYY 368
           INNT+ +N   YK YY
Sbjct: 134 INNTNNNNTNKYKDYY 149


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 110 QKKLELGRDPLPH 72
           QK LELG D LPH
Sbjct: 135 QKLLELGWDVLPH 147


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 110 QKKLELGRDPLPH 72
           QK LELG D LPH
Sbjct: 136 QKLLELGWDVLPH 148


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 110 QKKLELGRDPLPH 72
           QK LELG D LPH
Sbjct: 257 QKLLELGWDVLPH 269


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 239 F*NQCPKCT*LHLHNLKK 292
           F  QC KCT +   NL K
Sbjct: 71  FQTQCKKCTEIQKQNLDK 88


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 239 F*NQCPKCT*LHLHNLKK 292
           F  QC KCT +   NL K
Sbjct: 71  FQTQCKKCTEIQKQNLDK 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,756
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)