Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120354.Seq
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    28   1.3  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.3  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       27   3.0  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.0  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.1  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 511 EANEKIIHFANALVTANAGL-VQANTMLNEARR 606
           E+ EK+ H  + ++ A AGL   AN ++N ARR
Sbjct: 60  ESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 309 LITKEGVIQLIMKSKLPYAV 368
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 360 YAVELQAWLLEEVIPQCCARASTRRPSRWTQIMV*LKS*IKSWRLLAKVCRGQR 521
           YA  LQ    +E + +   R   R PSR  +I V + S I+ WR    +CR  R
Sbjct: 78  YAFRLQI-ASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWR--KTICRVDR 128


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 76  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 249
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 333 QLIMKSKLPYAVELQAWLLEEVIPQCCARASTRRPSRWTQIMV*LKS*IKSWRLLAKVCR 512
           +L+   KLPY V+L    L   +  C    ST   +    I+  +   +K WRL ++ C 
Sbjct: 643 KLLKGKKLPYGVDL----LRLWVASC---DSTNDTNLGPNILTQVGESLKKWRLTSRFCL 695

Query: 513 G 515
           G
Sbjct: 696 G 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,147
Number of Sequences: 5004
Number of extensions: 51688
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)