Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120354.Seq
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572...    30   1.3  
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    30   1.8  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    29   4.1  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    27   9.4  
01_05_0418 + 21964094-21964482,21964558-21964681                       27   9.4  

>02_05_0669 -
           30755406-30756081,30756869-30756933,30757040-30757209,
           30757313-30757496,30758536-30758619,30758740-30758938,
           30760200-30760441,30761811-30762053
          Length = 620

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 486 WRLLAKVCRGQRKNYTFCQCVGDRQRRIGA 575
           WR+LA+VC    K Y    C GDR+RR  A
Sbjct: 439 WRMLARVCTAPVK-YDPRWCAGDRRRRPAA 467


>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 49  VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 156
           V+ G FK  ED   +   L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 169  NCKQAVIVNVDKKYKTTY-SESGSIPYTP 252
            N +QA I+  D KY  ++ ++ GS+PY P
Sbjct: 1270 NSEQAAIITEDVKYTESFLNKPGSLPYAP 1298


>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
            132883-132996,133065-133193,133293-133469,133555-133746,
            134844-134981,135327-135559,135900-136003,136633-136727,
            136817-137053,137801-137922,138252-138354,138750-138826,
            138909-139017,139107-139253,139953-140000,140292-140492,
            140589-140738,140917-141002,141088-141193,141278-141373,
            141759-141911,142647-142819,142923-142986,144056-144193,
            144548-144595,144690-144836,144907-144968,146540-146645,
            147357-147461,147548-147679,147765-147974,148070-148171,
            148261-148398
          Length = 1729

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 97   YVLEQGNLQVKF----VAKDIASSLKYVNCKQAVIV 192
            Y LE  N  +K     +A+ IA +L Y NCK+ + V
Sbjct: 1174 YALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCV 1209


>01_05_0418 + 21964094-21964482,21964558-21964681
          Length = 170

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -3

Query: 628 GWPAAPFRGAPRLTLC*LAPIRRWRSP 548
           GW A  FRG PR  LC     R WR P
Sbjct: 111 GWMA--FRGWPRARLCRWLQSRCWRKP 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,545,022
Number of Sequences: 37544
Number of extensions: 379515
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)