Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120354.Seq
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3) 28 5.5
SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9) 28 5.5
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9) 28 5.5
SB_24800| Best HMM Match : DUF866 (HMM E-Value=4) 28 7.3
SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4) 28 7.3
SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1) 27 9.7
>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = -3
Query: 319 LVMSTVCGCRYSGSPCLTTLSGPGYMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 158
+VM TVC CRY S C+ +L V T C S C + C S+ V+++ +
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304
Query: 157 NCWRCL 140
C +C+
Sbjct: 305 LCTQCM 310
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 55 IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 216
I +F+FG ++ + ++KF AK+IA + K++ QAV ++ K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168
>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 590 NIVLACTNPALAVTNALAKCIIFSLASADFR*QTPTFYL 474
NIVLA N L+V A ++ + R +TP+FYL
Sbjct: 26 NIVLATLNSILSVPTAFINALVIAAILTTPRLRTPSFYL 64
>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G+ G+
Sbjct: 316 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGDSLRKLKRDTPGLGSKGK 364
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G+ G+
Sbjct: 327 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGDSLRKLKRDTPGLGSKGK 375
>SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 261 CLGRGIWYRPRLAVRRFVFFV-NINYHSLFT 172
C G IWY +++ RF+ V YH+L T
Sbjct: 112 CAGASIWYLAIISIDRFIAIVLPFRYHALMT 142
>SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)
Length = 257
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G G+
Sbjct: 126 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_58921| Best HMM Match : DUF286 (HMM E-Value=4.9)
Length = 352
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 196 VDKKYKTTYSESGSIPYTPAQTTWSSKVTHCTCSRTQCSS 315
+D+ +TY SG I Y QT W+++V+ T + Q S
Sbjct: 155 LDQSCISTYERSGPIVYLYLQTIWTNRVSLLTNALDQSIS 194
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 181 AVIVN-VDKKYKTTYSESGSIPYTPAQTTWSSKVTHCT 291
+++ N +D+ +TY SG I Y +T WS++V+ T
Sbjct: 115 SILTNALDQSCISTYERSGPIVYLYLRTLWSNRVSLLT 152
>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4275
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 67 KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 228
K GED F + +L++G V V D+ +S CK+ ++ Y+ Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097
>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G G+
Sbjct: 515 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 563
>SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9)
Length = 288
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G G+
Sbjct: 46 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGGKGK 94
>SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)
Length = 393
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 540 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
+C+G Q+R+G S +KR P G G+
Sbjct: 146 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174
>SB_31678| Best HMM Match : ApoC-I (HMM E-Value=4)
Length = 298
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 626
KS+ + KV +C+G Q+R+G S +KR P G G+
Sbjct: 31 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSLRKLKRDIPGLGGKGK 79
>SB_20114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 213 NDVQRVGVYTIYPGPDNVVKQGDPLYLQ 296
N R +Y + P P N GDPL L+
Sbjct: 6 NVTNRDTIYKVLPAPSNSCSPGDPLVLE 33
>SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1)
Length = 175
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 480 KSWRLLAKVCRGQRKNYTFCQCVGDRQRRIGAS*HNVKRGAPRNGAA 620
KS+ + KV +C+G Q+R+G S +KR P G A
Sbjct: 126 KSFNRVEKVYEADNIIVKKKECIGHVQKRVGNSLRKLKRDTPGLGVA 172
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,951
Number of Sequences: 59808
Number of extensions: 428955
Number of successful extensions: 943
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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