Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120349.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.2  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   3.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.9  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    25   9.1  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +1

Query: 121  IIKIAFHYVRLRGELIVFTDEMYCTILPAYFDREAIMHNGLKGLI*DLELSSRGF 285
            I +I + Y++L  +  +  D+ + T +P ++     +HN +KG + + E  + GF
Sbjct: 1098 IFRILYEYIQLSDDHTL--DDFWKTPVPIFYGEPDCIHNDMKGEL-NYENETEGF 1149


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 464 IFKSTAQFVPTKSAELYFQ*IIGLLELGSKISRCT*EQSATRCKIK 327
           IFK+T QF+PT+ A+++ +    +L+  + +  C  ++    C +K
Sbjct: 146 IFKTTVQFLPTRLAKIFEKKASEVLK-DNLLQTCNSKREGEVCDVK 190


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   SWLLSGLKRDLLTCQQFILANNNFRNFEIHFRKIKYVHNRIIKIAFHYVRLRGELIVFTD 180
           SW+LS + RD       IL  +   N ++  RK        +   FH +R   EL  F  
Sbjct: 475 SWILSSVVRD-------ILVEDELLNLQLKIRK-------FLMFTFHIIRSFSELTKFQS 520

Query: 181 EMY-CTILPAYFD 216
            +  C  L AY++
Sbjct: 521 SLEGCLNLAAYYE 533


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 698 NHFTYLHNVFMV*PKFMRCD--ALFPFRNKRIRFQIPTN 588
           +HF  + N++++ PKF++     L  +RNK  R    T+
Sbjct: 197 HHFECIGNLYLIGPKFLKTKEAVLNQYRNKEKRISKTTD 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,055
Number of Sequences: 5004
Number of extensions: 68733
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)