Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120349.Seq
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0118 + 25735966-25737601,25737698-25738488                       31   1.3  
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410...    29   4.1  

>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 727 AYEPISESLRIILHIYITCSWFDRNSCDAMLS 632
           AY+P+S +L  I+ I +TCS +     D   S
Sbjct: 381 AYDPVSRTLETIVSIMVTCSAYQNEKSDIRFS 412


>03_05_0257 +
           22439915-22440275,22440280-22440627,22440962-22441015,
           22441390-22441763
          Length = 378

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 331 LKWSRKIILLVVGRKKNLETRVPSLRLSPSNR 236
           + W  K+++  V R++ +ETR   LR+  + R
Sbjct: 258 ISWKPKLVIAAVARRRQVETREGGLRVGTAGR 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,560
Number of Sequences: 37544
Number of extensions: 370239
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)