Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120349.Seq
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    31   0.91 
Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 712 SESLRIILHIYITCSWFDRNSCDAMLSFLFAIRGSDSKYQQTSSCLVICISIHV-NKHYQ 536
           S++L   L+  IT    +    D +LS LFA  G D++Y  TSS L  C  +H  N ++Q
Sbjct: 277 SKNLLTWLNSMITLRIPNGTCKDCVLSNLFASLGKDNQY--TSSFLFFCYFLHFGNAYFQ 334

Query: 535 F 533
           +
Sbjct: 335 Y 335



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 646 DAMLSFLFAIRGSDSKYQQTSSCLVICISIHV-NKHYQF 533
           D +LS LFA  G D++Y  TSS L  C  +H  N ++Q+
Sbjct: 71  DCVLSNLFASLGKDNQY--TSSFLFFCYFLHFGNAYFQY 107


>Z99102-2|CAB11775.1|  499|Caenorhabditis elegans Hypothetical
           protein B0331.1 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 112 HNRIIKIAFHYVRLRGELIVFTDE 183
           H RI+  AFH+ +L G L VF  E
Sbjct: 134 HRRILTPAFHFAKLEGYLDVFNSE 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,437
Number of Sequences: 27780
Number of extensions: 378877
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)