Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120349.Seq
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 472 ELRSLKAQHSLYLQNLQ 422
           +L+S   QHSLYLQ  Q
Sbjct: 87  QLQSFMQQHSLYLQQQQ 103


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 37  TCQQFILANNNFRNFEIHFRKIKYVHNR 120
           TC+++ +++N+ R+    F++    H+R
Sbjct: 206 TCKKYAISSNSLRSRSRSFQRTSSCHSR 233


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 423 CRFCRYKLCCA 455
           C++CRY+ C A
Sbjct: 162 CQYCRYQKCLA 172


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 423 CRFCRYKLCCA 455
           C++CRY+ C A
Sbjct: 162 CQYCRYQKCLA 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,008
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)